Factsheet for Solyc06g065560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
peroxisome 2
plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT2G26640.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067205	Potato	peroxisome	99.22	99.22
Solyc08g067410.1.1	Tomato	plasma membrane	86.35	87.72
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	83.24	83.73
KRH56654	Soybean	endoplasmic reticulum	83.04	83.53
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	81.87	82.19
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	81.48	81.96
CDX70186	Canola	plastid	81.09	81.09
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	81.29	80.66
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	80.12	80.59
AT2G26640.1	Thale cress	plasma membrane	79.73	80.35
CDX98800	Canola	plastid	80.7	79.92
Zm00001d046444_P001	Maize	plasma membrane	79.73	79.42
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	79.53	79.07
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	60.04	78.77
GSMUA_AchrUn_...	Banana	peroxisome	60.82	78.59
GSMUA_Achr10P...	Banana	plasma membrane	65.69	78.01
TraesCS7B01G254900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	78.75	77.54
Os05t0574600-01	Rice	endoplasmic reticulum, peroxisome, plastid	78.17	77.12
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	77.97	77.07
TraesCS7D01G350500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	77.78	76.58
Solyc09g083050.2.1	Tomato	plasma membrane	76.02	76.02
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	76.61	76.02
Solyc12g006820.1.1	Tomato	plasma membrane	73.88	75.8
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	77.39	75.76
TraesCS6B01G207000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	77.39	75.76
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	75.05	75.05
TraesCS7A01G372300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	76.8	74.9
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	75.83	74.24
Zm00001d039094_P001	Maize	cytosol	72.71	73.28
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	73.88	73.03
Solyc03g005320.2.1	Tomato	plasma membrane	73.68	72.83
HORVU1Hr1G090730.1	Barley	peroxisome, plasma membrane, plastid	71.93	71.24
TraesCS1A01G413400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	71.54	70.58
TraesCS1D01G420900.1	Wheat	peroxisome	71.15	70.33
TraesCS6A01G177700.1	Wheat	plastid	77.58	69.46
VIT_11s0016g04700.t01	Wine grape	plastid	83.04	69.04
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	77.19	68.63
HORVU7Hr1G084610.6	Barley	cytosol, mitochondrion, plastid	78.56	67.17
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	65.11	64.6
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	59.26	61.66
Solyc02g063140.2.1	Tomato	golgi	59.26	61.29
Solyc02g085870.2.1	Tomato	plasma membrane	59.06	61.09
Solyc06g053870.2.1	Tomato	mitochondrion	57.5	60.7
Solyc10g009240.2.1	Tomato	peroxisome	61.99	60.11
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	56.34	58.5
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	55.95	57.98
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	56.92	56.26
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	51.27	51.98
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	40.55	46.12
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	38.99	45.25

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4C7I5	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF19	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc06g065560.1
EnsemblPlants:Solyc06g065560.1.1	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002765779	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:K4C7I5]

Coordinates

chr6:-:40951023..40952564

Molecular Weight (calculated)

57922.0 Da

IEP (calculated)

9.374

GRAVY (calculated)

-0.034

Length

513 amino acids

Sequence
(BLAST)

001: MSESKPEAPV NNPPPSYSRN FPDFKQSVKL KYVKLGYHYL ITHGMYLFLS PLVIVLAAQI STFSLSDLYV LWEQLRFNLI SVIICSTLLV FLSTLYFLTR
101: PRPVYLVNFS CYKPEDARIC TRKIFMERSK LVGSFPDETL EFQRKILERS GLGESTYLPE AVLRVPPNPC MAEARKEAEM VMFGAIDELL AKTGIKPKDI
201: GILVVNCSLF NPTPSLSAMI VNHYKLRGNI VSYNLGGMGC SAGLISIDLA KDLLQVHPNT YALVLSMENI TLNWYFGTEK SMLLPNCLFR MGGAAVMLSN
301: KGSERRRSKY QLVHTVRTHK GSDDKCFSCV YQMEDPNGKV GVSLSKDLMA VAGDALKTNI TTLGPLVLPM SEQLLFFATL VGRKLLKMKI KPYIPDFRLA
401: FEHFCIHAGG RAVLDEIEKN LQLTDWHMEP SRMTLYRFGN TSSSSLWYEL AYSEAKGRIK RGDRTWQIAF GSGFKCNSAV WKALRSINPA KEKSPWMDEI
501: DQFPVDVPRV AKI

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.