Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 97.8 | 95.69 |
| KRH56654 | Soybean | endoplasmic reticulum | 78.8 | 77.25 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 78.6 | 77.06 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 78.2 | 76.67 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 77.6 | 76.08 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 77.4 | 75.73 |
| AT2G26640.1 | Thale cress | plasma membrane | 76.6 | 75.25 |
| CDX70186 | Canola | plastid | 77.0 | 75.05 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 77.0 | 74.47 |
| CDX98800 | Canola | plastid | 77.0 | 74.32 |
| Solyc06g065560.1.1 | Tomato | nucleus | 75.8 | 73.88 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 74.2 | 73.47 |
| GSMUA_AchrUn_... | Banana | peroxisome | 57.8 | 72.8 |
| GSMUA_Achr10P... | Banana | plasma membrane | 62.6 | 72.45 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 56.2 | 71.87 |
| Solyc09g083050.2.1 | Tomato | plasma membrane | 73.4 | 71.54 |
| Zm00001d046444_P001 | Maize | plasma membrane | 73.6 | 71.46 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 74.8 | 71.37 |
| EER88601 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 73.6 | 71.32 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 74.2 | 71.21 |
| TraesCS6D01G166600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 74.6 | 71.18 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 73.0 | 70.6 |
| Os06t0598800-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 73.2 | 70.52 |
| Os05t0574600-01 | Rice | endoplasmic reticulum, peroxisome, plastid | 73.2 | 70.38 |
| TraesCS7D01G350500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 73.2 | 70.25 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 72.8 | 70.13 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 72.8 | 69.47 |
| EES19987 | Sorghum | cytosol, endoplasmic reticulum, plastid | 71.2 | 69.4 |
| TraesCS7A01G372300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 72.8 | 69.2 |
| Zm00001d039094_P001 | Maize | cytosol | 70.4 | 69.16 |
| Solyc03g005320.2.1 | Tomato | plasma membrane | 71.0 | 68.4 |
| HORVU1Hr1G090730.1 | Barley | peroxisome, plasma membrane, plastid | 69.6 | 67.18 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 69.0 | 66.35 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 68.6 | 66.09 |
| TraesCS6A01G177700.1 | Wheat | plastid | 74.8 | 65.27 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 74.6 | 64.64 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 78.0 | 63.21 |
| Solyc04g080450.1.1 | Tomato | golgi, peroxisome, plasma membrane | 65.2 | 63.06 |
| HORVU7Hr1G084610.6 | Barley | cytosol, mitochondrion, plastid | 74.2 | 61.83 |
| Solyc05g013220.2.1 | Tomato | endoplasmic reticulum, golgi, plastid | 60.0 | 60.85 |
| Solyc02g063140.2.1 | Tomato | golgi | 59.4 | 59.88 |
| Solyc06g053870.2.1 | Tomato | mitochondrion | 58.2 | 59.88 |
| Solyc06g053900.2.1 | Tomato | cytosol, plasma membrane, plastid | 57.4 | 57.98 |
| Solyc02g085870.2.1 | Tomato | plasma membrane | 57.2 | 57.66 |
| Solyc10g009240.2.1 | Tomato | peroxisome | 60.2 | 56.9 |
| Solyc05g009270.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 56.2 | 56.88 |
| Solyc05g009280.2.1 | Tomato | golgi, plasma membrane, plastid | 56.4 | 54.34 |
| Solyc08g067260.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 50.6 | 50.0 |
| Solyc09g065800.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 40.4 | 44.79 |
| Solyc09g065780.2.1 | Tomato | endoplasmic reticulum, golgi | 38.8 | 43.89 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | UniProt:K4DBL9 | PFAM:PF08392 |
| PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF65 | SUPFAM:SSF53901 | EnsemblPlantsGene:Solyc12g006820.1 |
| EnsemblPlants:Solyc12g006820.1.1 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI000276A961 | SEG:seg | : |
Description
3-ketoacyl-CoA synthase 11 [Source:Projected from Arabidopsis thaliana (AT2G26640) UniProtKB/Swiss-Prot;Acc:O48780]
Coordinates
chr12:+:1244804..1246306
Molecular Weight (calculated)
56101.5 Da
IEP (calculated)
9.598
GRAVY (calculated)
-0.066
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPSSNKLPD YNKSVKLKYV KLGYHYLITH GMYLLLTPLV AVVAAHMSTI TPQDLSELWD NLQYNLISVI SCSTLIVIVL TVYVVTRPRP VYLVDFNCYK
101: PSEAFKCTMQ TFMDQSKLTG AFSEENLDFQ RRILQRSGLG DNTYFPEALL NIPPNPSLKE ARKEAETVMF GAIDGLLAKT NMKTKDIGIL IVNCSLFNPT
201: PSLSAMIINH YKLRGNIASY NLGGMGCSAG VVSIDLAKKL LQVHPGTYAL VVSTENITLN WYLGNDRSKL VSNCLFRMGG AAILLSNKWT ERRRSKYQLL
301: HAVRTNKGAD DKCFASVTQE EDANGKLGVS LSKELMAVAG DALKTNITTL GPLVLPISEQ LLFFATLVGK KLFKMQLKPY IPDFKLAFEH FCIHAGGRAV
401: LDEIEKNLHL TERHLEPSRM TLYRFGNTSS SSLWYELAYT EAKRRVKRGD RVWQIGFGSG FKCNSAVWKA LRTIKPVKEV NPWMDEIDKF PVDVPRVANF
101: PSEAFKCTMQ TFMDQSKLTG AFSEENLDFQ RRILQRSGLG DNTYFPEALL NIPPNPSLKE ARKEAETVMF GAIDGLLAKT NMKTKDIGIL IVNCSLFNPT
201: PSLSAMIINH YKLRGNIASY NLGGMGCSAG VVSIDLAKKL LQVHPGTYAL VVSTENITLN WYLGNDRSKL VSNCLFRMGG AAILLSNKWT ERRRSKYQLL
301: HAVRTNKGAD DKCFASVTQE EDANGKLGVS LSKELMAVAG DALKTNITTL GPLVLPISEQ LLFFATLVGK KLFKMQLKPY IPDFKLAFEH FCIHAGGRAV
401: LDEIEKNLHL TERHLEPSRM TLYRFGNTSS SSLWYELAYT EAKRRVKRGD RVWQIGFGSG FKCNSAVWKA LRTIKPVKEV NPWMDEIDKF PVDVPRVANF
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.