Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | Zm00001d004812_P002 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | Zm00001d023560_P002 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | Zm00001d053016_P002 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19987 | Sorghum | cytosol, endoplasmic reticulum, plastid | 93.91 | 93.18 |
| Os05t0574600-01 | Rice | endoplasmic reticulum, peroxisome, plastid | 85.27 | 83.46 |
| HORVU1Hr1G090730.1 | Barley | peroxisome, plasma membrane, plastid | 79.37 | 77.99 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 78.39 | 76.73 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 78.19 | 76.69 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 76.42 | 75.24 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 74.07 | 73.78 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 72.89 | 73.47 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 72.69 | 73.27 |
| Zm00001d046444_P001 | Maize | plasma membrane | 73.87 | 73.01 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 73.08 | 72.94 |
| KRH56654 | Soybean | endoplasmic reticulum | 72.89 | 72.75 |
| Solyc06g065560.1.1 | Tomato | nucleus | 73.28 | 72.71 |
| PGSC0003DMT400067205 | Potato | peroxisome | 73.08 | 72.51 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 72.3 | 72.16 |
| CDX70186 | Canola | plastid | 72.5 | 71.93 |
| AT2G26640.1 | Thale cress | plasma membrane | 71.51 | 71.51 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 72.5 | 71.37 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 71.51 | 71.37 |
| CDX98800 | Canola | plastid | 72.3 | 71.04 |
| Solyc12g006820.1.1 | Tomato | plasma membrane | 69.16 | 70.4 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 69.74 | 69.47 |
| Zm00001d009608_P001 | Maize | plasma membrane | 67.78 | 68.32 |
| Zm00001d039053_P001 | Maize | plasma membrane | 67.19 | 66.54 |
| Zm00001d048953_P001 | Maize | mitochondrion, plastid | 64.64 | 64.13 |
| Zm00001d048061_P001 | Maize | golgi | 59.53 | 61.34 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 74.07 | 61.1 |
| Zm00001d045660_P001 | Maize | mitochondrion | 34.38 | 60.14 |
| Zm00001d028241_P003 | Maize | endoplasmic reticulum, golgi, plasma membrane | 58.35 | 60.12 |
| Zm00001d037328_P001 | Maize | cytosol | 42.24 | 58.58 |
| Zm00001d030343_P001 | Maize | cytosol, peroxisome, plasma membrane | 60.51 | 57.57 |
| Zm00001d032948_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 53.83 | 55.35 |
| Zm00001d014168_P001 | Maize | peroxisome, plasma membrane, plastid | 54.03 | 54.46 |
| Zm00001d028406_P001 | Maize | peroxisome | 58.15 | 54.11 |
| Zm00001d047931_P001 | Maize | peroxisome | 57.96 | 54.03 |
| Zm00001d027766_P001 | Maize | mitochondrion | 55.4 | 53.31 |
| Zm00001d027904_P001 | Maize | plastid | 55.99 | 52.49 |
| Zm00001d051787_P001 | Maize | mitochondrion | 49.51 | 51.96 |
| Zm00001d017941_P001 | Maize | plasma membrane | 48.92 | 50.51 |
| Zm00001d009354_P001 | Maize | endoplasmic reticulum | 44.2 | 46.3 |
| Zm00001d044580_P001 | Maize | mitochondrion | 43.81 | 45.79 |
| Zm00001d044579_P001 | Maize | golgi | 40.47 | 41.7 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | EntrezGene:103630762 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 |
| UniProt:A0A1D6MDJ1 | InterPro:ACP_syn_III_C | ProteinID:AQK88719.1 | InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 |
| InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF65 |
| SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI00022195B5 | EnsemblPlantsGene:Zm00001d039094 | EnsemblPlants:Zm00001d039094_P001 |
| EnsemblPlants:Zm00001d039094_T001 | SEG:seg | : | : | : | : |
Description
3-ketoacyl-CoA synthase
Coordinates
chr6:-:169955183..169956712
Molecular Weight (calculated)
56590.5 Da
IEP (calculated)
9.559
GRAVY (calculated)
-0.111
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDDPRTTA AASSMPDFKQ SVKLKYVKLG YHHLISHGAY LLLAPLPGLV AAHLSTFTAR DLAELWQSLQ YNLASVLVAT TALVVTATAY ALTRPRPVYL
101: VDFACYRPRD ERRCSRARFM NCTESLGTFT PENVEFQRRI IERSGLGEDT YLPEAVLNIP PNPSMASARE EAEMVMFGAL DELFAKTGVR PKEIGVLVVN
201: CSLFNPTPSL SAMVVNHYRL RGNVASYNLG GMGCSAGIIA VDLARDLLQC HRGTYAVVVS TENITLNWYL GNDRSMLVSN CLFRMGGAAL LLSNRGSARR
301: RSKYQLVHTV RTHRAADDRC FGCVRQREDG EGRVGVSLSR ELMAVAGDAL KTNITTLGPL VLPMSEQLLF FATLVARTVL KRKVKPYIPD FKLAFEHFCI
401: HAGGRAVLDE LEKNLRLTDW HMEPSRMTLH RFGNTSSSSL WYELAYAEAK GRIKKGDRTW QIAFGSGFKC NSAVWKALRS VNPAKEKRGN PWMDDIDRYP
501: VAVPKVSAI
101: VDFACYRPRD ERRCSRARFM NCTESLGTFT PENVEFQRRI IERSGLGEDT YLPEAVLNIP PNPSMASARE EAEMVMFGAL DELFAKTGVR PKEIGVLVVN
201: CSLFNPTPSL SAMVVNHYRL RGNVASYNLG GMGCSAGIIA VDLARDLLQC HRGTYAVVVS TENITLNWYL GNDRSMLVSN CLFRMGGAAL LLSNRGSARR
301: RSKYQLVHTV RTHRAADDRC FGCVRQREDG EGRVGVSLSR ELMAVAGDAL KTNITTLGPL VLPMSEQLLF FATLVARTVL KRKVKPYIPD FKLAFEHFCI
401: HAGGRAVLDE LEKNLRLTDW HMEPSRMTLH RFGNTSSSSL WYELAYAEAK GRIKKGDRTW QIAFGSGFKC NSAVWKALRS VNPAKEKRGN PWMDDIDRYP
501: VAVPKVSAI
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.