Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g067410.1.1 | Tomato | plasma membrane | 99.21 | 99.21 |
| PGSC0003DMT400067205 | Potato | peroxisome | 87.72 | 86.35 |
| KRH56654 | Soybean | endoplasmic reticulum | 82.18 | 81.37 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 81.98 | 81.18 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 81.58 | 80.63 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 81.19 | 80.39 |
| AT2G26640.1 | Thale cress | plasma membrane | 80.59 | 79.96 |
| CDX70186 | Canola | plastid | 80.99 | 79.73 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 81.19 | 79.3 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 80.0 | 79.22 |
| CDX98800 | Canola | plastid | 81.19 | 79.15 |
| Zm00001d046444_P001 | Maize | plasma membrane | 79.21 | 77.67 |
| GSMUA_AchrUn_... | Banana | peroxisome | 60.99 | 77.58 |
| EER88601 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 79.21 | 77.52 |
| Os05t0574600-01 | Rice | endoplasmic reticulum, peroxisome, plastid | 79.01 | 76.73 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 59.21 | 76.47 |
| Os06t0598800-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 78.42 | 76.3 |
| GSMUA_Achr10P... | Banana | plasma membrane | 65.15 | 76.16 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 76.83 | 75.05 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 77.43 | 75.05 |
| TraesCS7D01G350500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 77.03 | 74.66 |
| EES19987 | Sorghum | cytosol, endoplasmic reticulum, plastid | 75.25 | 74.07 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 76.83 | 74.05 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 76.83 | 74.05 |
| TraesCS6D01G166600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 76.83 | 74.05 |
| TraesCS7A01G372300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 77.03 | 73.95 |
| Zm00001d039094_P001 | Maize | cytosol | 73.27 | 72.69 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 73.27 | 72.41 |
| PGSC0003DMT400015633 | Potato | plasma membrane | 74.65 | 72.36 |
| HORVU1Hr1G090730.1 | Barley | peroxisome, plasma membrane, plastid | 73.47 | 71.62 |
| PGSC0003DMT400034973 | Potato | plasma membrane | 73.27 | 71.29 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 73.27 | 71.29 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 72.87 | 70.91 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 72.87 | 70.77 |
| TraesCS6A01G177700.1 | Wheat | plastid | 77.03 | 67.89 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 82.38 | 67.42 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 77.03 | 67.42 |
| PGSC0003DMT400042065 | Potato | cytosol | 49.51 | 67.2 |
| HORVU7Hr1G084610.6 | Barley | cytosol, mitochondrion, plastid | 77.82 | 65.5 |
| PGSC0003DMT400009451 | Potato | cytosol, peroxisome, plasma membrane | 66.53 | 64.74 |
| PGSC0003DMT400028047 | Potato | plasma membrane | 65.94 | 62.24 |
| PGSC0003DMT400014188 | Potato | endoplasmic reticulum, golgi, plasma membrane | 60.59 | 62.07 |
| PGSC0003DMT400042071 | Potato | plasma membrane | 59.41 | 61.48 |
| PGSC0003DMT400041959 | Potato | endoplasmic reticulum, golgi, vacuole | 53.27 | 61.28 |
| PGSC0003DMT400032993 | Potato | plasma membrane | 59.21 | 60.28 |
| PGSC0003DMT400037757 | Potato | plastid | 54.85 | 60.09 |
| PGSC0003DMT400062136 | Potato | cytosol, golgi, plasma membrane | 58.81 | 59.88 |
| PGSC0003DMT400041960 | Potato | endoplasmic reticulum, golgi, vacuole | 52.08 | 58.71 |
| PGSC0003DMT400037714 | Potato | plasma membrane | 56.63 | 57.89 |
| PGSC0003DMT400019063 | Potato | cytosol, peroxisome, plasma membrane | 56.63 | 52.96 |
| PGSC0003DMT400049683 | Potato | endoplasmic reticulum, golgi | 41.78 | 47.42 |
| PGSC0003DMT400051894 | Potato | endoplasmic reticulum, plasma membrane | 41.19 | 46.02 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | UniProt:M1ABI1 | PFAM:PF08392 |
| PFAM:PF08541 | EnsemblPlantsGene:PGSC0003DMG400007373 | PGSC:PGSC0003DMG400007373 | EnsemblPlants:PGSC0003DMT400019029 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF19 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI00029501AA | : |
Description
Beta-ketoacyl-coa synthase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007373]
Coordinates
chr8:-:40944429..40946611
Molecular Weight (calculated)
56671.0 Da
IEP (calculated)
9.317
GRAVY (calculated)
-0.066
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MNESKPSSNS RNLPDFKQSV KLKYVKLGYH YLITHGMYLF LSPLVVIIAA QLSTFSPNDF YVLWEQLRFN LISVVICSTL LVFLSTVYFI TRPSPVYLVN
101: FSCYKPEDAR KCTKGNFLEM SKSVGTFSDG NLEFQRKIVE RSGLGDSTYL PEAVTNVPPN PCMAEARKEA EAVMFGAIDE LLAKTSVKPK DIGILVVNCS
201: LFNPTPSLSA MIVNHYKLRG NVISYNLGGM GCSAGLISID LAKDLLQVHP NTFALVLSME NITLNWYFGN EKSMLLPNCL FRMGGAAVLL SNKRSDKKRS
301: KYQLVHTVRT HKGADDKCFT CVYQLEDSDG KVGVSLSKEL MAVAGDALKT NITTLGPLVL PMSEQFLFFA TLVGRKLLKA KIRPYIPDFK LAFEHFCIHA
401: GGRAVLDELE KNLQLSDWHM EPSRMTLHRF GNTSSSSLWY ELAYSEAKGR IRKGDRTWQI AFGSGFKCNS AVWKALRSIN PDKEKNPWMD EIHQFPVDVP
501: KVARI
101: FSCYKPEDAR KCTKGNFLEM SKSVGTFSDG NLEFQRKIVE RSGLGDSTYL PEAVTNVPPN PCMAEARKEA EAVMFGAIDE LLAKTSVKPK DIGILVVNCS
201: LFNPTPSLSA MIVNHYKLRG NVISYNLGGM GCSAGLISID LAKDLLQVHP NTFALVLSME NITLNWYFGN EKSMLLPNCL FRMGGAAVLL SNKRSDKKRS
301: KYQLVHTVRT HKGADDKCFT CVYQLEDSDG KVGVSLSKEL MAVAGDALKT NITTLGPLVL PMSEQFLFFA TLVGRKLLKA KIRPYIPDFK LAFEHFCIHA
401: GGRAVLDELE KNLQLSDWHM EPSRMTLHRF GNTSSSSLWY ELAYSEAKGR IRKGDRTWQI AFGSGFKCNS AVWKALRSIN PDKEKNPWMD EIHQFPVDVP
501: KVARI
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.