Factsheet for PGSC0003DMT400049683

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	91.91	92.53
VIT_07s0141g00070.t01	Wine grape	cytosol	48.76	54.25
VIT_07s0141g00090.t01	Wine grape	cytosol	49.44	51.28
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	51.01	51.24
PGSC0003DMT400042065	Potato	cytosol	41.57	49.73
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	49.89	47.64
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	43.15	43.74
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	44.04	43.36
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	43.37	43.08
PGSC0003DMT400037757	Potato	plastid	43.82	42.3
PGSC0003DMT400019029	Potato	plasma membrane	47.42	41.78
PGSC0003DMT400034973	Potato	plasma membrane	48.54	41.62
PGSC0003DMT400015633	Potato	plasma membrane	48.54	41.46
PGSC0003DMT400067205	Potato	peroxisome	47.64	41.33
PGSC0003DMT400042071	Potato	plasma membrane	44.27	40.37
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	45.84	39.92
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	44.04	39.76
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	43.37	38.91
PGSC0003DMT400032993	Potato	plasma membrane	43.15	38.71
PGSC0003DMT400028047	Potato	plasma membrane	45.84	38.13
PGSC0003DMT400037714	Potato	plasma membrane	42.02	37.85
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	43.82	37.57
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	39.55	32.59

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102605420	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1BP62
PFAM:PF08392	PFAM:PF08541	EnsemblPlantsGene:PGSC0003DMG400019305	PGSC:PGSC0003DMG400019305	EnsemblPlants:PGSC0003DMT400049683	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF10	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000296088A
RefSeq:XP_006349735.2	SEG:seg	:	:	:	:

Description

Beta-ketoacyl-coa synthase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019305]

Coordinates

chr9:-:48653992..48655401

Molecular Weight (calculated)

50167.6 Da

IEP (calculated)

7.982

GRAVY (calculated)

-0.127

Length

445 amino acids

Sequence
(BLAST)

001: MELIITYPKL FFITLTLVLL FFFRKNNKRR VFLVDFSCYK PPKNQQVDRQ TFVDKSSKTL CYNKDSLEFM DKMLERSGLG DKTYLSKGLL KEPTDMSAEA
101: AKEEVEMAIF GVIDELLLKT GVQCEDIGML ITVFGGYNIM PSVSSVIVKR YNLRHDIRTY NVTGMGCTAG LVALGLVQNL LKVHDNSCAL VVTSESTTAN
201: VYKGNDRSKL LANCIFRVGA VALLLSNKPS DVNTSKYELI HTVRSQTSDD DRSYNCIFME EDVEGHRGVT INKDLLYAAM KTIRLNISTV APLVLPLSEK
301: FRYLVNLIST KSKVESYSPN FAKSIDHFFP HVGGKPVLDD LQNKLGFSDE QMEASRMTLY RIGNTSSSSI WYEVAYAEAK GRVKKGDALW QIAFGSGFKC
401: NSVIWKAIRS VNRDEMNPWR DEIHEFPVDV SDIEVVPPDL FVASK

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.