Factsheet for VIT_07s0141g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00070.t01	Wine grape	cytosol	65.03	69.75
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	68.3	66.14
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	69.0	63.52
VIT_05s0020g04540.t01	Wine grape	plasma membrane	61.54	50.67
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	53.38	50.66
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	51.98	49.45
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	51.28	49.44
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	49.88	48.42
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	57.58	48.34
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	52.91	44.6
VIT_03s0063g02640.t01	Wine grape	plasma membrane	51.98	44.25
VIT_14s0006g02990.t01	Wine grape	plasma membrane	50.35	43.9
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	50.35	43.55
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	45.45	42.48
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	52.45	42.45
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	47.79	41.67
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	43.36	41.52
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	50.58	40.94
VIT_11s0016g04700.t01	Wine grape	plastid	58.04	40.36
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.39	39.33

Protein Annotations

KEGG:00062+2.3.1.199	EntrezGene:100263120	wikigene:100263120	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
EMBL:AM427642	ProteinID:CAN71360	ProteinID:CAN71360.1	ProteinID:CCB44695	ProteinID:CCB44695.1	InterPro:Chalcone/stilbene_synth_C
ncoils:Coil	UniProt:F6GXK9	InterPro:FAE1_typ3_polyketide_synth	EMBL:FN594965	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
EntrezGene:LOC100263120	wikigene:LOC100263120	PFAM:PF02797	PFAM:PF08392	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF10	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000210950B	ArrayExpress:VIT_07s0141g00090	EnsemblPlantsGene:VIT_07s0141g00090
EnsemblPlants:VIT_07s0141g00090.t01	unigene:Vvi.11764	RefSeq:XP_002280864	RefSeq:XP_002280864.1	SEG:seg	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6GXK9]

Coordinates

chr7:+:53787..55529

Molecular Weight (calculated)

48329.2 Da

IEP (calculated)

8.014

GRAVY (calculated)

-0.180

Length

429 amino acids

Sequence
(BLAST)

001: MANPCRKVYL LDFACYKPAN SLQCTKEMFL ERCRRVGNFS EDSLDFIKKT LERSGLGEST YLPEGLMRFY PPNTCMEEAR KEAEMVMFGA VDELLAKTGL
101: KGKEIGIVVV NCTIFNPVPS LSSMIVNRYK LGENVLSYNL GGMGCSGGVR AISLAKHLLQ VHHNSYALVL STENITPNCY MGHDRSKILI NCLFRVGAAA
201: ILLSNRPSDR RCSKYQLIHT VDTHTASSDR SYNCIFQEED HEGHMGVTVS KDLLAVATIA INSNLAALGR LILPASEKLR FLANYIIRYF HVANIEPYVP
301: NFKSAFDHFL PHPGGKPVLD EVERNLKISE TQMEASRMTL YRFGNVSSST VWYELAYTEA KGRVKRGDRV WQIAFGSGFK CTSLIWKAMR TVDSREKMNP
401: WSDEIDEFPV VQPQSTGSFS FFFESFEPT

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.