Factsheet for VIT_09s0070g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21431	Soybean	peroxisome	73.12	72.69
KRH10887	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	72.92	72.5
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	58.1	55.47
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	50.2	49.71
VIT_03s0063g02640.t01	Wine grape	plasma membrane	49.41	49.6
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.41	49.12
VIT_14s0006g02990.t01	Wine grape	plasma membrane	46.84	48.17
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	50.2	47.92
VIT_05s0020g04540.t01	Wine grape	plasma membrane	48.81	47.41
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	46.05	46.98
VIT_07s0141g00090.t01	Wine grape	cytosol	39.33	46.39
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	44.66	45.94
VIT_07s0141g00070.t01	Wine grape	cytosol	34.19	43.25
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	36.76	41.99
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	37.94	41.83
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	36.76	41.52
VIT_11s0016g04700.t01	Wine grape	plastid	50.2	41.17
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	36.96	40.13

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100256735	wikigene:100256735	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	ProteinID:CCB61444	ProteinID:CCB61444.1	ncoils:Coil	UniProt:F6I3C6
InterPro:FAE1_typ3_polyketide_synth	EMBL:FN596740	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100256735
wikigene:LOC100256735	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF21
SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0001985C5C	ArrayExpress:VIT_09s0070g00300	EnsemblPlantsGene:VIT_09s0070g00300
EnsemblPlants:VIT_09s0070g00300.t01	RefSeq:XP_002273798	RefSeq:XP_002273798.1	SEG:seg	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6I3C6]

Coordinates

chr9:+:13412885..13414668

Molecular Weight (calculated)

57112.4 Da

IEP (calculated)

9.267

GRAVY (calculated)

-0.063

Length

506 amino acids

Sequence
(BLAST)

001: MASHNQEHLS TEIVNRGIAD SGPYAGSLSF SVRVRRGLPD FLNSVNLKYV KLGYGYLISH GFYFLTAPVV LVIFGAQIGK LTWDDFCLKC DLMNALFMMG
101: LLSLILYIHL DLKPRSTYLV DFACYRPPDE LKTSKEKFIE LARKSGNFDD VAIEFQQRVL KNSGIGDETY LPTGIFHAGH RRTLKDGREE AAMVMFGAVN
201: ELLAATKIKI KDIRILIVNC GMLNTTPSLS AMLVNHFKLG HYVQSFNLGG MGCAAGVIAI DLARDLLNAY RGSYALVVST EAVSYSWYSG KDIHMLLPNC
301: FFRMGAAAML LSNCHLDRWR SKYELKQLVR THKGMDNRSF KSILLKEDGE GKQGLSVSKD VVEVGSHALK DNITTLGPLV LPFSEQLHFF TTLLFHNSKP
401: YIPNYKLAFE HVCILATSKQ VLDEIQKNLK LTEEYMEASR RTLERFGNTS SSSIWYELSY LEANRRVKRG DRIWQIAFGS GFKCNSVVWK ALRNVGMPKH
501: SPWFEN

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.