Factsheet for VIT_07s0141g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00070.t01	Wine grape	cytosol	78.54	91.5
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	83.05	87.36
VIT_07s0141g00090.t01	Wine grape	cytosol	63.52	69.0
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	49.14	50.78
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	47.64	49.89
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	45.92	48.42
VIT_05s0020g04540.t01	Wine grape	plasma membrane	53.0	47.41
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	45.49	46.9
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	47.21	43.05
VIT_14s0006g02990.t01	Wine grape	plasma membrane	44.42	42.07
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	44.21	41.53
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	40.56	41.18
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	39.48	41.07
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	44.85	41.06
VIT_03s0063g02640.t01	Wine grape	plasma membrane	44.21	40.87
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	43.13	40.85
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.71	40.19
VIT_11s0016g04700.t01	Wine grape	plastid	49.36	37.28
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	40.13	36.96
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	41.63	36.6

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100240826	wikigene:100240826	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	ProteinID:CCB44693	ProteinID:CCB44693.1	UniProt:F6GXK7	InterPro:FAE1_typ3_polyketide_synth
EMBL:FN594965	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100240826	wikigene:LOC100240826
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF10	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002109509	ArrayExpress:VIT_07s0141g00060	EnsemblPlantsGene:VIT_07s0141g00060	EnsemblPlants:VIT_07s0141g00060.t01
RefSeq:XP_002275067	RefSeq:XP_002275067.1	SEG:seg	:	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6GXK7]

Coordinates

chr7:-:26730..38544

Molecular Weight (calculated)

51651.1 Da

IEP (calculated)

9.316

GRAVY (calculated)

0.095

Length

466 amino acids

Sequence
(BLAST)

001: MFLLGFISND LLGFLISQSG FILSMAVMVG LTLIAFIMLS IFAFGSSPKI FLLDFACYKP PSSLACTKEM VIERLRRHGN FSDESLKFMK KLMKTSGLGE
101: ATYLSEGLLR EPLDMSMEAT RKEAEMVVFG ALLGKTGVKG EEIGIVVVHS SIFNTVPSLA SMIVNRYKLG KNVLSYNLSG MGCSAGLLSI GLAKDLLKVH
201: RNSYALVVTT EIITQGCYMG NNPSKLIGNC CFRMGGAAVF LSNRPSDRSS SKYQLIHTVH TNTASSDCSY NCIIQEKDHE GHVGITINKD LLVVVSEIIK
301: SNVATLAPLI LPASERLLYL ANYLIRYFHV ANIKPYVPNV KRAVDHFFPH VGAKPILDKV ARSLRMSEGQ MEASRMTLYR FGNTSSSSVW YELAYAEAKG
401: RIKRGDRVWQ IAYGSGFKCS SAFWKAIRTI DREKMNPWSD VIDEFPVVDP HSTETFPYAF ESSKSK

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.