Factsheet for VIT_11s0016g04700.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	72.45	87.65
KRH56654	Soybean	endoplasmic reticulum	72.45	87.65
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	72.29	87.28
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	70.34	85.1
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	69.37	83.92
GSMUA_AchrUn_...	Banana	peroxisome	53.81	83.63
Solyc06g065560.1.1	Tomato	nucleus	69.04	83.04
GSMUA_Achr10P...	Banana	plasma membrane	58.02	82.87
Solyc08g067410.1.1	Tomato	plasma membrane	67.75	82.77
PGSC0003DMT400067205	Potato	peroxisome	68.72	82.65
PGSC0003DMT400019029	Potato	plasma membrane	67.42	82.38
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	52.19	82.35
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	67.26	80.43
Zm00001d046444_P001	Maize	plasma membrane	67.1	80.39
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	66.45	79.0
Os05t0574600-01	Rice	endoplasmic reticulum, peroxisome, plastid	66.45	78.85
TraesCS7B01G254900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	65.96	78.12
Solyc12g006820.1.1	Tomato	plasma membrane	63.21	78.0
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	64.99	77.56
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	64.18	77.5
TraesCS7D01G350500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	64.99	76.97
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	65.32	76.91
TraesCS6B01G207000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	65.15	76.72
VIT_05s0020g04540.t01	Wine grape	plasma membrane	64.67	76.58
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	63.53	76.41
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	64.51	75.95
TraesCS7A01G372300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	64.02	75.1
Zm00001d039094_P001	Maize	cytosol	61.1	74.07
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	61.75	73.41
HORVU1Hr1G090730.1	Barley	peroxisome, plasma membrane, plastid	61.26	72.97
TraesCS1D01G420900.1	Wheat	peroxisome	61.1	72.64
TraesCS1A01G413400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	60.94	72.31
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	67.1	71.75
TraesCS6A01G177700.1	Wheat	plastid	66.61	71.73
VIT_03s0063g02640.t01	Wine grape	plasma membrane	56.08	68.65
HORVU7Hr1G084610.6	Barley	cytosol, mitochondrion, plastid	66.29	68.17
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.75	67.58
VIT_14s0006g02990.t01	Wine grape	plasma membrane	50.89	63.82
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	50.89	63.31
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	53.48	62.26
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	46.35	58.13
VIT_07s0141g00090.t01	Wine grape	cytosol	40.36	58.04
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	47.16	54.91
VIT_07s0141g00070.t01	Wine grape	cytosol	34.36	53.0
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	37.28	51.92
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.17	50.2
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	37.28	49.36
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	35.33	48.66
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	35.49	47.71

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100266256	wikigene:100266256	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	EMBL:AM440408	ProteinID:CAN67313	ProteinID:CAN67313.1	ProteinID:CCB51559
ProteinID:CCB51559.1	UniProt:F6HH63	InterPro:FAE1_typ3_polyketide_synth	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	EntrezGene:LOC100266256	wikigene:LOC100266256	PFAM:PF08392	PFAM:PF08541	PANTHER:PTHR31561
PANTHER:PTHR31561:SF19	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI00021081FF	ArrayExpress:VIT_11s0016g04700
EnsemblPlantsGene:VIT_11s0016g04700	EnsemblPlants:VIT_11s0016g04700.t01	unigene:Vvi.7346	RefSeq:XP_002284986	RefSeq:XP_002284986.1	:

Description

No Description!

Coordinates

chr11:+:3988735..3992060

Molecular Weight (calculated)

69659.8 Da

IEP (calculated)

9.862

GRAVY (calculated)

-0.140

Length

617 amino acids

Sequence
(BLAST)

001: MSFTSLLRIP SWLAQNLLSK KERGPSKNSL KEAKRRRNTI RTVYNGKTES RHAEKDTLYS PHSQPPMKFQ SQYIYSALCV SFLLFGSSGA IELWNDRWRV
101: VALEGKMSEA KVDTPLISPS SSRNLPDFKK SVKLKYVKLG YHYLITHGMY LFLSPLVVVI AAQLSTFSLQ DLHDLWDHLR FNLISVILCS TLLVFLSTLY
201: FLTRPRPVYL VDFACYKPEE SRKCTRKIFM DQSQMTGSFT ESSLEFQRKI LEKSGLGEST YLPEAVLNIP PNPSMQEARK EAATVMFGAL DQLFAKTSLK
301: PKDIGILVVN CSLFNPTPSL SAMVINHYKL RGNIISYNLG GMGCSAGLIS IDLAKDLLQV HPNSYALVIS MENITLNWYF GNQRSMLVSN CLFRMGGAAV
401: LLSNKSSDRR RSKYRLVHTV RTHKGADDKC FACVTQEEDA EGKVGVSLSK DLMGVAGDAL KTNITTLGPL VLPMSEQLLF FATLIGRKLF KMKLKPYIPD
501: FKLAFEHFCI HAGGRAVLDE LEKNLHLSDW HMEPSRMTLY RFGNTSSSSL WYELAYTEAK GRIKKGDRTW QIAFGSGFKC NSAVWKALRT INPAQEKNPW
601: MDEIDMFPVN VPKVSAL

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.