Factsheet for GSMUA_Achr7P08410_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

plastid 1
vacuole 2
endoplasmic reticulum 2
cytosol 1
extracellular 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT2G26640.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT2G26640.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT2G26640.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	peroxisome	85.68	84.38
GSMUA_Achr10P...	Banana	plasma membrane	90.54	81.94
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	80.56	61.64
KRH56654	Soybean	endoplasmic reticulum	78.52	60.2
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	79.28	60.08
Solyc06g065560.1.1	Tomato	nucleus	78.77	60.04
PGSC0003DMT400067205	Potato	peroxisome	78.77	60.04
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	78.26	60.0
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	79.54	59.92
Zm00001d046444_P001	Maize	plasma membrane	78.77	59.81
Solyc08g067410.1.1	Tomato	plasma membrane	76.98	59.6
AT2G26640.1	Thale cress	plasma membrane	77.49	59.53
PGSC0003DMT400019029	Potato	plasma membrane	76.47	59.21
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	76.98	59.02
CDX70186	Canola	plastid	75.96	57.89
TraesCS7B01G254900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	76.98	57.77
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	74.94	57.45
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	75.96	57.45
CDX98800	Canola	plastid	75.96	57.34
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	76.73	57.25
TraesCS7D01G350500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	76.21	57.2
TraesCS6B01G207000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.47	57.06
TraesCS7A01G372300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	75.96	56.46
Solyc12g006820.1.1	Tomato	plasma membrane	71.87	56.2
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	74.17	56.09
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	74.42	55.53
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	72.12	55.19
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	71.87	54.14
TraesCS6A01G177700.1	Wheat	plastid	76.73	52.36
VIT_11s0016g04700.t01	Wine grape	plastid	82.35	52.19
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	76.73	51.99
HORVU7Hr1G084610.6	Barley	cytosol, mitochondrion, plastid	77.24	50.33
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	61.89	49.59
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	58.31	49.35
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	50.13	49.12
GSMUA_Achr1P02540_001	Banana	cytosol	53.2	49.06
GSMUA_Achr3P02180_001	Banana	plasma membrane	43.99	48.73
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	48.08	48.7
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	51.92	48.1
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	57.8	47.98
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	42.46	43.01
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	48.34	42.66
GSMUA_Achr3P07400_001	Banana	plasma membrane	42.2	42.42
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	44.5	41.53
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	47.06	41.26
GSMUA_Achr5P05870_001	Banana	plasma membrane	43.99	40.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	45.52	39.91
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	48.85	39.22

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr7G08410_001	EnsemblPlants:GSMUA_Achr7P08410_001	EnsemblPlants:GSMUA_Achr7T08410_001	InterPro:IPR016039
UniProt:M0TFT1	PFAM:PF08392	PFAM:PF08541	PANTHER:PTHR31561	PANTHER:PTHR31561:SF19	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000294DF44	:	:	:

Description

3-ketoacyl-CoA synthase 11 [Source:GMGC_GENE;Acc:GSMUA_Achr7G08410_001]

Coordinates

chr7:-:6278452..6280340

Molecular Weight (calculated)

44029.7 Da

IEP (calculated)

10.062

GRAVY (calculated)

-0.047

Length

391 amino acids

Sequence
(BLAST)

001: MAESEQRANA ALLQSSSSRL PDFKQSVKLK YVKLGYHYVI THGMYLFFSP LIAVLVAQLS TFSIKDLHDL WDHLRFNLIS AVLCSTLLVF LSTVYFLTRR
101: RPVYLVNFAC YKPEDPRKCT RQIFMDRSTL TGSKEARTVM FGAIDELLTK TNVKPKDIGI LIVNCSLFNP TPSLSAMVVY PNSYALVVSM ENITLNWYFG
201: NNRSMLVSNC LFRMGGAAIL LSNKRSDRRR SKYQLVHTVR THKGADDKCF SCVTQEEDEN GKIGVSLSKD LMAVAGDALK TNITTLGPLV LPMSEQLIFL
301: ATLVAKKPSR MTLYRFGNTS SSSLWYELAY SEGKGRIKKK DRIWQIAFGS GFKCNSAVWK SLKSINPANE KNPWMDEINN FPVAVPKVSA L

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.