Factsheet for GSMUA_Achr1P02540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01120.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	77.12	61.47
Zm00001d028406_P001	Maize	peroxisome	77.59	60.15
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	75.71	60.0
Zm00001d047931_P001	Maize	peroxisome	76.65	59.52
EER91722	Sorghum	peroxisome	75.0	59.44
KXG39781	Sorghum	peroxisome	76.18	58.83
TraesCS4A01G068400.1	Wheat	peroxisome	75.0	58.78
TraesCS4D01G226100.1	Wheat	peroxisome	74.53	58.63
HORVU4Hr1G063420.1	Barley	peroxisome	75.24	58.53
TraesCS4B01G225500.1	Wheat	peroxisome	74.06	57.51
CDY15199	Canola	cytosol	44.34	55.29
GSMUA_AchrUn_...	Banana	peroxisome	51.42	54.91
Bra032621.1-P	Field mustard	plasma membrane	62.97	54.38
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.51	53.21
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	49.06	53.2
CDY32443	Canola	plasma membrane	59.43	52.72
CDY37475	Canola	plasma membrane	58.96	52.3
KRH68953	Soybean	cytosol, golgi, nucleus	65.33	52.26
Solyc10g009240.2.1	Tomato	peroxisome	64.86	51.98
PGSC0003DMT400028047	Potato	plasma membrane	65.09	51.59
AT1G01120.1	Thale cress	plasma membrane	64.15	51.52
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	55.66	50.11
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	54.48	50.0
CDX90012	Canola	cytosol	62.26	49.91
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	49.29	49.53
GSMUA_Achr3P02180_001	Banana	plasma membrane	41.04	49.29
GSMUA_Achr10P...	Banana	plasma membrane	50.0	49.07
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	43.4	47.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	49.76	47.63
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	46.23	46.78
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	42.45	46.63
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	51.65	44.88
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	47.17	44.84
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	48.11	44.44
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	48.11	43.78
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	50.24	43.74
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	45.52	43.27
GSMUA_Achr3P07400_001	Banana	plasma membrane	38.68	42.16
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	39.62	42.11
GSMUA_Achr5P05870_001	Banana	plasma membrane	40.8	41.19
CDY41551	Canola	golgi	48.82	32.91
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	48.58	32.34

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:35.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr1G02540_001	EnsemblPlants:GSMUA_Achr1P02540_001	EnsemblPlants:GSMUA_Achr1T02540_001
InterPro:IPR016039	UniProt:M0RWG2	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF67	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000296FC1B	SEG:seg

Description

3-ketoacyl-CoA synthase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G02540_001]

Coordinates

chr1:+:2108572..2110152

Molecular Weight (calculated)

47249.2 Da

IEP (calculated)

8.957

GRAVY (calculated)

-0.116

Length

424 amino acids

Sequence
(BLAST)

001: MDMAAAEPAV MDRERLTAEM AFRDSSIVIK IHRRLPDFLH SVNLKYVKLG LGYTSIPTSY LLVSLLVSAV AATLRLDRVL MATSVRLSRP RPVYLVDFAC
101: YKPDDEQKIS KQGFLEMTEC TGMFNDESLD FQTKITNRSG LGDETYLPPG VQFRPPRLCM AEARMEAEAV MFGCLDALFE ATGVNPRRDI RILIVNCSLF
201: NPTPSLASMI INRYKIREDN ITLNWYFGND RSMLLSNCIF RMGGAAMLLS NRRADAGRAK YKLVHTVRTH KGADDSCYGC VYQREDGRGA VGVSLARELM
301: AVAGDALKTN ITTLGPLVLP LSEQLKFLAT LNLGLSATDI EPSRSVLHRF GNTSSSSLWY ELAYAEAKGR VRRGHRVWQI GFGSGFKCNS AVWWALRDVP
401: PVDAGGRGRC NPWSDCVDRY PIKG

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.