Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01120.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G01120.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G01120.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G226100.1 | Wheat | peroxisome | 97.25 | 98.52 |
| TraesCS4A01G068400.1 | Wheat | peroxisome | 96.89 | 97.78 |
| HORVU4Hr1G063420.1 | Barley | peroxisome | 97.44 | 97.61 |
| Os03t0245700-02 | Rice | cytosol, peroxisome, plastid | 87.55 | 89.85 |
| Zm00001d028406_P001 | Maize | peroxisome | 86.63 | 86.47 |
| KXG39781 | Sorghum | peroxisome | 86.08 | 85.61 |
| Zm00001d047931_P001 | Maize | peroxisome | 83.88 | 83.88 |
| GSMUA_Achr1P02540_001 | Banana | cytosol | 57.51 | 74.06 |
| CDY15199 | Canola | cytosol | 43.96 | 70.59 |
| Solyc10g009240.2.1 | Tomato | peroxisome | 60.07 | 62.0 |
| VIT_15s0048g02720.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 60.07 | 61.89 |
| AT1G01120.1 | Thale cress | plasma membrane | 58.97 | 60.98 |
| PGSC0003DMT400028047 | Potato | plasma membrane | 59.71 | 60.93 |
| KRH68953 | Soybean | cytosol, golgi, nucleus | 58.61 | 60.38 |
| Bra032621.1-P | Field mustard | plasma membrane | 54.03 | 60.08 |
| CDY37475 | Canola | plasma membrane | 51.65 | 59.0 |
| CDY32443 | Canola | plasma membrane | 51.65 | 59.0 |
| CDX90012 | Canola | cytosol | 56.59 | 58.41 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 54.58 | 57.2 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 53.11 | 55.34 |
| TraesCS1B01G436300.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 52.93 | 55.05 |
| AT2G46720.1 | Thale cress | endoplasmic reticulum, plasma membrane | 46.7 | 54.72 |
| TraesCS6B01G098300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 51.28 | 54.58 |
| AT3G10280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 45.6 | 54.25 |
| TraesCS4B01G297500.1 | Wheat | golgi | 49.63 | 50.19 |
| TraesCS4B01G278800.1 | Wheat | golgi | 46.52 | 49.8 |
| TraesCS1B01G421100.1 | Wheat | golgi | 41.76 | 49.14 |
| TraesCS1B01G387800.2 | Wheat | plasma membrane | 44.14 | 48.1 |
| TraesCS6B01G473900.1 | Wheat | mitochondrion | 44.14 | 47.82 |
| TraesCS6B01G324200.1 | Wheat | plasma membrane | 41.39 | 46.69 |
| TraesCS7B01G113000.1 | Wheat | golgi | 41.58 | 46.23 |
| TraesCS4B01G274700.1 | Wheat | plastid | 39.93 | 45.51 |
| TraesCS7B01G113100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 37.36 | 45.33 |
| TraesCS7B01G449300.1 | Wheat | plasma membrane | 38.46 | 43.93 |
| TraesCS6B01G373000.1 | Wheat | endoplasmic reticulum, golgi | 32.97 | 43.17 |
| TraesCS7B01G006100.1 | Wheat | mitochondrion | 38.28 | 42.92 |
| TraesCS3B01G488500.1 | Wheat | plasma membrane | 38.46 | 42.86 |
| TraesCS7B01G449000.1 | Wheat | golgi | 37.91 | 42.51 |
| TraesCS2B01G535600.1 | Wheat | golgi, mitochondrion | 37.55 | 42.27 |
| TraesCS1B01G048000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 37.73 | 42.21 |
| TraesCS2B01G535700.1 | Wheat | endoplasmic reticulum, plasma membrane | 35.35 | 42.14 |
| TraesCS7B01G006300.1 | Wheat | golgi | 37.36 | 41.89 |
| TraesCS6B01G372900.1 | Wheat | golgi | 38.46 | 41.75 |
| TraesCS6B01G036000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 37.18 | 41.6 |
| TraesCS7B01G113200.1 | Wheat | golgi | 37.73 | 41.45 |
| CDY41551 | Canola | golgi | 47.44 | 41.18 |
| TraesCS3B01G313800.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 37.73 | 40.71 |
| CDX80041 | Canola | endoplasmic reticulum, golgi, plasma membrane | 47.44 | 40.66 |
| TraesCS1B01G053700.1 | Wheat | endoplasmic reticulum | 36.45 | 40.04 |
| TraesCS1B01G443100.1 | Wheat | cytosol | 6.41 | 15.84 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF67 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS4B01G225500 | EnsemblPlants:TraesCS4B01G225500.1 |
| TIGR:cd00831 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:472133199..472135124
Molecular Weight (calculated)
60442.4 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.040
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAPAAAFM ERERLTAEVT FSGDAQAASS EGAERLPSII VKIRRRLPDF ARSVNLKYVR LGIRHGGSLT SYLPMLCVPV LAAAAYSFVR LDVIYLSIDL
101: LSCVAWLGTA MLLLTVYYFK RPRPVYLVEF ACYKPEDQNK ITKEAFLDMT ESTGCFNDET LAFQTKITTR SALGDETYLP SGVLARPPRL NMAEARLEAE
201: AVMFGCLDAL FASTGIDPRR DVRILIVNCS LFNPTPSLAS MIIHHYKMRE DVKSFNLGGM GCSAGLIAID LAKDMLQANP NSYAVVLSTE NITLNWYFGN
301: DRSMLLSNCI FRMGGAAALL SNRRADAGRA KYRLLHTVRT HKGATDECFK CVYQREDDVG KVGVSLAREL MSVAGDALKT NITTLGPLVL PLSEQLKFLK
401: SLMMRRVFRA KGVRPYIPNF RRAFEHFCVH AGGRAVLEEV QRSLSLEDKD MEPSRCALHR FGNTSSSSLW YELAYAEAKG RVKRGNRVWQ IGFGSGFKCN
501: SAVWRALRDV PAVSPPPAGA AAPGPEEKAC NPWVDCVAKY PPKAYV
101: LSCVAWLGTA MLLLTVYYFK RPRPVYLVEF ACYKPEDQNK ITKEAFLDMT ESTGCFNDET LAFQTKITTR SALGDETYLP SGVLARPPRL NMAEARLEAE
201: AVMFGCLDAL FASTGIDPRR DVRILIVNCS LFNPTPSLAS MIIHHYKMRE DVKSFNLGGM GCSAGLIAID LAKDMLQANP NSYAVVLSTE NITLNWYFGN
301: DRSMLLSNCI FRMGGAAALL SNRRADAGRA KYRLLHTVRT HKGATDECFK CVYQREDDVG KVGVSLAREL MSVAGDALKT NITTLGPLVL PLSEQLKFLK
401: SLMMRRVFRA KGVRPYIPNF RRAFEHFCVH AGGRAVLEEV QRSLSLEDKD MEPSRCALHR FGNTSSSSLW YELAYAEAKG RVKRGNRVWQ IGFGSGFKCN
501: SAVWRALRDV PAVSPPPAGA AAPGPEEKAC NPWVDCVAKY PPKAYV
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.