Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G037600.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 90.37 | 90.37 |
| TraesCS1D01G039200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 89.34 | 89.71 |
| TraesCS6B01G036000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 77.66 | 77.66 |
| TraesCS7B01G113200.1 | Wheat | golgi | 75.2 | 73.84 |
| TraesCS1B01G053700.1 | Wheat | endoplasmic reticulum | 74.39 | 73.04 |
| OQU76197 | Sorghum | golgi | 60.86 | 62.0 |
| TraesCS7B01G113000.1 | Wheat | golgi | 60.86 | 60.49 |
| TraesCS6B01G324200.1 | Wheat | plasma membrane | 59.22 | 59.71 |
| TraesCS1B01G421100.1 | Wheat | golgi | 56.15 | 59.05 |
| TraesCS4B01G274700.1 | Wheat | plastid | 54.92 | 55.95 |
| TraesCS3B01G488500.1 | Wheat | plasma membrane | 55.74 | 55.51 |
| TraesCS6B01G372900.1 | Wheat | golgi | 56.35 | 54.67 |
| TraesCS7B01G449300.1 | Wheat | plasma membrane | 53.28 | 54.39 |
| TraesCS7B01G113100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 49.59 | 53.78 |
| TraesCS7B01G449000.1 | Wheat | golgi | 53.28 | 53.39 |
| GSMUA_Achr3P07400_001 | Banana | plasma membrane | 41.8 | 52.44 |
| PGSC0003DMT400037757 | Potato | plastid | 48.77 | 51.63 |
| TraesCS6B01G373000.1 | Wheat | endoplasmic reticulum, golgi | 43.85 | 51.32 |
| KRH35956 | Soybean | plasma membrane | 52.05 | 51.21 |
| VIT_14s0006g02990.t01 | Wine grape | plasma membrane | 51.02 | 50.61 |
| TraesCS3B01G313800.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 52.46 | 50.59 |
| Solyc02g085870.2.1 | Tomato | plasma membrane | 51.23 | 50.4 |
| KRG90814 | Soybean | cytosol, golgi, plasma membrane | 51.23 | 50.4 |
| PGSC0003DMT400032993 | Potato | plasma membrane | 51.02 | 50.2 |
| VIT_01s0011g03490.t01 | Wine grape | cytosol, golgi, plasma membrane | 50.61 | 49.8 |
| GSMUA_Achr5P05870_001 | Banana | plasma membrane | 42.83 | 49.76 |
| TraesCS7B01G006100.1 | Wheat | mitochondrion | 49.59 | 49.69 |
| Solyc02g063140.2.1 | Tomato | golgi | 50.41 | 49.6 |
| PGSC0003DMT400062136 | Potato | cytosol, golgi, plasma membrane | 50.0 | 49.19 |
| KRH45255 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 49.8 | 48.99 |
| VIT_19s0093g00440.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 49.39 | 48.98 |
| CDY42109 | Canola | plasma membrane | 49.59 | 48.69 |
| Bra024749.1-P | Field mustard | plasma membrane | 49.59 | 48.69 |
| Bra004034.1-P | Field mustard | plasma membrane | 48.98 | 48.58 |
| CDY04232 | Canola | plasma membrane | 49.39 | 48.49 |
| AT1G68530.1 | Thale cress | plasma membrane | 49.39 | 48.49 |
| PGSC0003DMT400037714 | Potato | plasma membrane | 48.98 | 48.38 |
| AT1G25450.1 | Thale cress | plasma membrane | 48.77 | 48.37 |
| CDY07381 | Canola | plasma membrane | 49.18 | 48.29 |
| TraesCS7B01G006300.1 | Wheat | golgi | 48.16 | 48.25 |
| Solyc05g009270.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 48.77 | 48.18 |
| TraesCS2B01G535700.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.26 | 47.16 |
| TraesCS2B01G535600.1 | Wheat | golgi, mitochondrion | 46.72 | 47.01 |
| Solyc05g009280.2.1 | Tomato | golgi, plasma membrane, plastid | 49.59 | 46.63 |
| TraesCS6B01G098300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 45.08 | 42.88 |
| TraesCS1B01G436300.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 44.47 | 41.33 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 44.06 | 41.27 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 43.65 | 40.65 |
| TraesCS4B01G278800.1 | Wheat | golgi | 42.42 | 40.59 |
| TraesCS6B01G473900.1 | Wheat | mitochondrion | 40.57 | 39.29 |
| TraesCS1B01G387800.2 | Wheat | plasma membrane | 39.55 | 38.52 |
| TraesCS4B01G297500.1 | Wheat | golgi | 42.62 | 38.52 |
| TraesCS4B01G225500.1 | Wheat | peroxisome | 42.21 | 37.73 |
| TraesCS1B01G443100.1 | Wheat | cytosol | 6.76 | 14.93 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF64 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS1B01G048000 | EnsemblPlants:TraesCS1B01G048000.1 |
| TIGR:cd00831 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:28164787..28166253
Molecular Weight (calculated)
53791.6 Da
IEP (calculated)
9.322
GRAVY (calculated)
0.118
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPHLNKH LKPLFQLVVN NFLVFVAAPV TVIVVLRKAA QLGPEEILSR LHGLRQVHVL LAIFLPFALA TLYLMSRPRS VYLIDYACCR PKSNCRVSIG
101: SSIENVRFSP YLDDGGVDFM TRMLKRSGLG DQTYLHPSFH YIPPRCCLSD GRDEAEQVIF SAVDDLLART GISPGTIDIL VTNCSGFNPT PSLADIVVNK
201: YKLRTDIRSV HISGMGCSAG VISLEVVRNL LQAAPRGARA LMVSTEGTCI VNYTGKNRGM LLPYSLFRMG AAAVLLSTSK SVARFRLMHV VRTLTATQDR
301: AYLCISMKED DEGETGAYLS KDLVSVAGEA LKANIATMGA LVLPPSEKIL FAISFIAREV LRSKIKLYVP DFRTAFQHFC IHSGGRAVID AVQNSLSLSD
401: RDVEASRMTL HRFGNTSSSS LWYELAYIEA KRRMRKGGRV WMIGFGSGFK CNSAVWQCMR PDSNTTVATP WADSIHLYPL NNISEEVG
101: SSIENVRFSP YLDDGGVDFM TRMLKRSGLG DQTYLHPSFH YIPPRCCLSD GRDEAEQVIF SAVDDLLART GISPGTIDIL VTNCSGFNPT PSLADIVVNK
201: YKLRTDIRSV HISGMGCSAG VISLEVVRNL LQAAPRGARA LMVSTEGTCI VNYTGKNRGM LLPYSLFRMG AAAVLLSTSK SVARFRLMHV VRTLTATQDR
301: AYLCISMKED DEGETGAYLS KDLVSVAGEA LKANIATMGA LVLPPSEKIL FAISFIAREV LRSKIKLYVP DFRTAFQHFC IHSGGRAVID AVQNSLSLSD
401: RDVEASRMTL HRFGNTSSSS LWYELAYIEA KRRMRKGGRV WMIGFGSGFK CNSAVWQCMR PDSNTTVATP WADSIHLYPL NNISEEVG
001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
Arabidopsis Description
KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.