Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G166600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 99.05 | 99.05 |
| TraesCS6A01G177700.1 | Wheat | plastid | 98.86 | 90.4 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 98.28 | 89.25 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 82.44 | 83.56 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 81.3 | 81.77 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 81.68 | 81.68 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 78.05 | 78.81 |
| KRH56654 | Soybean | endoplasmic reticulum | 76.34 | 78.43 |
| GSMUA_AchrUn_... | Banana | peroxisome | 59.16 | 78.09 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 75.95 | 78.04 |
| GSMUA_Achr10P... | Banana | plasma membrane | 64.12 | 77.78 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 75.57 | 77.5 |
| Solyc06g065560.1.1 | Tomato | nucleus | 75.76 | 77.39 |
| PGSC0003DMT400067205 | Potato | peroxisome | 75.76 | 77.39 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 74.43 | 77.23 |
| CDX70186 | Canola | plastid | 75.57 | 77.19 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 75.95 | 76.98 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 74.05 | 76.83 |
| CDX98800 | Canola | plastid | 75.76 | 76.64 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 57.06 | 76.47 |
| AT2G26640.1 | Thale cress | plasma membrane | 74.24 | 76.42 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 74.24 | 76.27 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 73.09 | 75.1 |
| Solyc12g006820.1.1 | Tomato | plasma membrane | 71.37 | 74.8 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 71.95 | 73.78 |
| TraesCS6B01G098300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 64.5 | 65.89 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 76.72 | 65.15 |
| TraesCS1B01G436300.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 64.89 | 64.76 |
| TraesCS6B01G473900.1 | Wheat | mitochondrion | 52.67 | 54.76 |
| TraesCS4B01G278800.1 | Wheat | golgi | 52.48 | 53.92 |
| TraesCS1B01G387800.2 | Wheat | plasma membrane | 51.15 | 53.49 |
| TraesCS4B01G225500.1 | Wheat | peroxisome | 55.34 | 53.11 |
| TraesCS1B01G421100.1 | Wheat | golgi | 46.18 | 52.16 |
| TraesCS4B01G297500.1 | Wheat | golgi | 52.67 | 51.11 |
| TraesCS6B01G324200.1 | Wheat | plasma membrane | 45.99 | 49.79 |
| TraesCS7B01G113000.1 | Wheat | golgi | 45.42 | 48.47 |
| TraesCS7B01G449000.1 | Wheat | golgi | 44.66 | 48.05 |
| TraesCS7B01G449300.1 | Wheat | plasma membrane | 43.7 | 47.91 |
| TraesCS4B01G274700.1 | Wheat | plastid | 43.7 | 47.81 |
| TraesCS3B01G488500.1 | Wheat | plasma membrane | 43.32 | 46.33 |
| TraesCS7B01G113100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 39.31 | 45.78 |
| TraesCS6B01G036000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 42.56 | 45.7 |
| TraesCS6B01G373000.1 | Wheat | endoplasmic reticulum, golgi | 36.26 | 45.56 |
| TraesCS6B01G372900.1 | Wheat | golgi | 43.51 | 45.33 |
| TraesCS7B01G113200.1 | Wheat | golgi | 42.18 | 44.47 |
| TraesCS1B01G048000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 40.65 | 43.65 |
| TraesCS1B01G053700.1 | Wheat | endoplasmic reticulum | 41.22 | 43.46 |
| TraesCS2B01G535700.1 | Wheat | endoplasmic reticulum, plasma membrane | 37.21 | 42.58 |
| TraesCS2B01G535600.1 | Wheat | golgi, mitochondrion | 39.31 | 42.47 |
| TraesCS7B01G006100.1 | Wheat | mitochondrion | 39.31 | 42.3 |
| TraesCS3B01G313800.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 40.46 | 41.9 |
| TraesCS7B01G006300.1 | Wheat | golgi | 37.98 | 40.86 |
| TraesCS1B01G443100.1 | Wheat | cytosol | 7.63 | 18.1 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF8 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS6B01G207000 | EnsemblPlants:TraesCS6B01G207000.1 |
| TIGR:cd00831 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:261452631..261454205
Molecular Weight (calculated)
58379.1 Da
IEP (calculated)
8.805
GRAVY (calculated)
-0.035
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEDSTPPA GAGAGAGECA SSPSPSRRLP DFLQSVRLKY VKLGYHYLIT HGMYLLLTPL IVLIAVHLST LSPGDVADLW THLRFNLLSV IACSTLLVFL
101: STVYFLTRPR SVYLVDFGCY KPGPERRCSR ETFMRCSKLT GNFTEANLDF QRKILERSGL GEDTYIPPAL VTVPPNPSME LARQEAQVCM FGAIDNMLAK
201: TGVKPKDIGI LVVNCSLFNP TPSLSAMVVN HYKLRGNIVS YNLGGMGCSA GLLSIDLAKD LLQVHPNSYA MVVSTENITL NWYFGNNRSM LVSNCLFRMG
301: CAAILLSNKR SDRRRSKYEL IHTVRTHKGA DDKCFSCVTQ EEDDSGKVGV ALSKDLMAVA GDALKTNITT LGPLVLPFSE QLLFMVTLVG KKLFKMKIKP
401: YIPDFKLAFE HFCIHAGGRA VLDEIEKNMD LTDWHMEPSR MTLFRFGNTS SSSLWYELAY SEAKGRIRRR DRIWQIAFGS GFKCNSAVWK ALRSVNPAKE
501: QNNPWMDEID TFPVDVPKVS KVAE
101: STVYFLTRPR SVYLVDFGCY KPGPERRCSR ETFMRCSKLT GNFTEANLDF QRKILERSGL GEDTYIPPAL VTVPPNPSME LARQEAQVCM FGAIDNMLAK
201: TGVKPKDIGI LVVNCSLFNP TPSLSAMVVN HYKLRGNIVS YNLGGMGCSA GLLSIDLAKD LLQVHPNSYA MVVSTENITL NWYFGNNRSM LVSNCLFRMG
301: CAAILLSNKR SDRRRSKYEL IHTVRTHKGA DDKCFSCVTQ EEDDSGKVGV ALSKDLMAVA GDALKTNITT LGPLVLPFSE QLLFMVTLVG KKLFKMKIKP
401: YIPDFKLAFE HFCIHAGGRA VLDEIEKNMD LTDWHMEPSR MTLFRFGNTS SSSLWYELAY SEAKGRIRRR DRIWQIAFGS GFKCNSAVWK ALRSVNPAKE
501: QNNPWMDEID TFPVDVPKVS KVAE
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.