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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, endoplasmic reticulum, nucleus
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
 plastid: 21417358
msms PMID: 21417358 doi
DR Demartini, R Jain, G Agrawal, JJ Thelen
Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26640.1 CDX90725 AT4G09570.1 19130088
AT2G26640.1 CDY05064 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009413.1-P Field mustard cytosol, golgi, plasma membrane 98.46 98.65
CDX70186 Canola plastid 97.1 98.05
AT2G26640.1 Thale cress plasma membrane 90.73 92.34
VIT_04s0008g04710.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 80.89 82.0
Solyc08g067410.1.1 Tomato plasma membrane 79.54 81.58
PGSC0003DMT400019029 Potato plasma membrane 79.15 81.19
Solyc06g065560.1.1 Tomato nucleus 79.92 80.7
PGSC0003DMT400067205 Potato peroxisome 79.73 80.51
Zm00001d046444_P001 Maize plasma membrane 77.8 78.25
GSMUA_AchrUn_... Banana peroxisome 59.85 78.09
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 77.61 77.91
CDX94721 Canola cytosol 59.27 77.53
Os05t0574600-01 Rice endoplasmic reticulum, peroxisome, plastid 77.41 77.12
Solyc12g006820.1.1 Tomato plasma membrane 74.32 77.0
GSMUA_Achr10P... Banana plasma membrane 63.9 76.62
Os06t0598800-01 Rice cytosol, endoplasmic reticulum, plasma membrane 76.45 76.3
TraesCS7B01G254900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 76.64 76.2
GSMUA_Achr7P08410_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 57.34 75.96
TraesCS6B01G207000.1 Wheat endoplasmic reticulum, plasma membrane, plastid 76.64 75.76
TraesCS6D01G166600.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 76.64 75.76
PGSC0003DMT400002734 Potato cytosol, peroxisome, plasma membrane 74.71 75.73
Zm00001d016438_P001 Maize endoplasmic reticulum, peroxisome, plasma membrane 75.48 75.63
TraesCS7D01G350500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 76.06 75.62
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 74.13 74.85
TraesCS7A01G372300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 75.48 74.33
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 74.9 74.05
Zm00001d039094_P001 Maize cytosol 71.04 72.3
CDY15199 Canola cytosol 47.3 72.06
Os02t0205500-01 Rice cytosol, peroxisome, plasma membrane 72.01 71.87
HORVU1Hr1G090730.1 Barley peroxisome, plasma membrane, plastid 71.81 71.81
CDY63070 Canola cytosol 50.77 71.47
TraesCS1A01G413400.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 70.85 70.58
TraesCS1D01G420900.1 Wheat peroxisome 70.66 70.52
CDY14892 Canola endoplasmic reticulum, golgi, plastid 70.85 69.77
TraesCS6A01G177700.1 Wheat plastid 77.03 69.63
CDX89699 Canola cytosol 43.63 69.54
CDX96912 Canola endoplasmic reticulum, golgi, plastid 70.66 69.45
CDX89834 Canola plasma membrane 69.5 69.1
HORVU6Hr1G036950.5 Barley cytosol, peroxisome 76.83 68.98
CDY18212 Canola plasma membrane 69.31 67.86
CDY47457 Canola cytosol, endoplasmic reticulum, plasma membrane 50.0 66.58
HORVU7Hr1G084610.6 Barley cytosol, mitochondrion, plastid 76.83 66.33
CDY29431 Canola plasma membrane 61.58 65.91
CDX81929 Canola plasma membrane 64.67 65.69
CDY21665 Canola plasma membrane 64.48 65.49
CDY26665 Canola cytosol, peroxisome, plasma membrane 61.97 64.85
CDY10355 Canola cytosol 32.05 64.34
CDX71278 Canola cytosol, peroxisome, plasma membrane 62.36 63.71
CDY46211 Canola cytosol, peroxisome, plasma membrane 61.97 63.31
CDX76286 Canola golgi 57.92 63.29
CDY46243 Canola golgi 57.72 63.08
CDY07381 Canola plasma membrane 57.14 59.56
CDY04232 Canola plasma membrane 56.56 58.95
CDX90012 Canola cytosol 59.46 58.22
CDY26762 Canola endoplasmic reticulum, peroxisome, plasma membrane 52.9 58.05
CDY02266 Canola endoplasmic reticulum, golgi, plasma membrane 49.81 57.98
CDX69040 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 51.54 57.54
CDY42109 Canola plasma membrane 55.02 57.34
CDX89700 Canola endoplasmic reticulum, golgi, plasma membrane 47.68 57.31
CDY17465 Canola plasma membrane 52.51 57.26
CDX75415 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 51.16 57.11
CDY37475 Canola plasma membrane 52.32 56.69
CDY32443 Canola plasma membrane 52.32 56.69
CDX71202 Canola endoplasmic reticulum, golgi, plasma membrane 51.93 56.39
CDX72475 Canola endoplasmic reticulum, golgi 45.75 56.03
CDY47458 Canola cytosol 5.41 56.0
CDY49290 Canola endoplasmic reticulum, golgi 45.56 55.79
CDX76287 Canola endoplasmic reticulum, golgi, plasma membrane 53.28 54.55
CDX77038 Canola cytosol, endoplasmic reticulum, plasma membrane 54.25 52.82
CDY11498 Canola endoplasmic reticulum, peroxisome, plasma membrane 55.41 52.37
CDY35309 Canola cytosol, endoplasmic reticulum, plasma membrane 55.21 52.09
CDX76724 Canola cytosol, endoplasmic reticulum, plasma membrane 54.83 51.92
CDY37951 Canola endoplasmic reticulum, plasma membrane 40.35 46.55
CDY49219 Canola endoplasmic reticulum, plasma membrane 40.35 46.14
CDX68323 Canola endoplasmic reticulum, golgi 39.77 45.68
CDY66107 Canola endoplasmic reticulum, plasma membrane, plastid 39.58 45.66
CDY05644 Canola plasma membrane, plastid, vacuole 39.38 44.64
CDY33931 Canola plastid 39.0 44.2
CDY41551 Canola golgi 51.74 42.61
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 51.74 42.07
CDY49218 Canola plasma membrane 0.58 1.05
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:00650+2.3.1.19InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1
GO:A0A078E9N2InterPro:ACP_syn_III_CEnsemblPlants:CDX98800ProteinID:CDX98800ProteinID:CDX98800.1InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016740GO:GO:0016747
EnsemblPlantsGene:GSBRNA2T00106894001InterPro:IPR016039PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561
PANTHER:PTHR31561:SF19MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433MetaCyc:PWY-6598
MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724MetaCyc:PWY-7725
SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-likeUniPathway:UPA00094UniParc:UPI0004EE2E49SEG:seg
Description
BnaC09g50350D
Coordinates
chrLK031907:-:60466..62524
Molecular Weight (calculated)
58571.4 Da
IEP (calculated)
9.389
GRAVY (calculated)
-0.152
Length
518 amino acids
Sequence
(BLAST)
001: MSAEEEKRRP LMMGGRRDSS SSDRNLPDFK KSVKLKYVKL GYHYLITHGM YLLLSPLLLL IAAQLSTFSR TDLATLWDHL QYNLISVILC STLLVFITTI
101: YVMTRPRPVY LVDFSCYKPD EARKCTKKIF MERSKLTGSF TEENLEFQRK ILQRSGLGES TYLPEAVLNV PPNPCMAEAR KEAEAVMFGA IDELLDKTNV
201: NPKDIGILIV NCSLFNPTPS LSAMIVNHYK LRGNILSYNL GGMGCSAGLI SIDLAKHLLN SIPNTYAMVI SMENITLNWY FGNDRSKLVS NCLFRMGGAA
301: VLLSNKRWDR RRSKYELVDT VRTHKGADDK CFGCVTQEED SASKVGVTLS KDLMAVAGDA LKTNITTLGP LVLPTSEQLL FFATLVGRKL FKMKIKPYIP
401: DFKLAFEHFC IHAGGRAVLD ELEKNLKLTD WHMEPSRMTL YRFGNTSSSS LWYELAYSEA KGRIKKGDRI WQIAFGSGFK CNSSVWRAVR SVNPKKEKNP
501: WMDEIHEFPV DVPTHATI
Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.