Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065560.1.1 | Tomato | nucleus | 99.22 | 99.22 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 86.35 | 87.72 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 82.85 | 83.33 |
| KRH56654 | Soybean | endoplasmic reticulum | 82.65 | 83.14 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 81.48 | 81.8 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 80.9 | 81.37 |
| CDX70186 | Canola | plastid | 80.9 | 80.9 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 81.09 | 80.46 |
| AT2G26640.1 | Thale cress | plasma membrane | 79.53 | 80.16 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 79.53 | 80.0 |
| CDX98800 | Canola | plastid | 80.51 | 79.73 |
| Zm00001d046444_P001 | Maize | plasma membrane | 79.73 | 79.42 |
| EER88601 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 79.53 | 79.07 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 60.04 | 78.77 |
| GSMUA_AchrUn_... | Banana | peroxisome | 60.62 | 78.34 |
| GSMUA_Achr10P... | Banana | plasma membrane | 65.69 | 78.01 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 78.75 | 77.54 |
| Os06t0598800-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 77.97 | 77.07 |
| Os05t0574600-01 | Rice | endoplasmic reticulum, peroxisome, plastid | 77.78 | 76.73 |
| TraesCS7D01G350500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 77.78 | 76.58 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 76.61 | 76.02 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 77.39 | 75.76 |
| TraesCS6D01G166600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 77.39 | 75.76 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 74.66 | 74.95 |
| TraesCS7A01G372300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 76.8 | 74.9 |
| PGSC0003DMT400015633 | Potato | plasma membrane | 75.83 | 74.66 |
| EES19987 | Sorghum | cytosol, endoplasmic reticulum, plastid | 74.66 | 74.66 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 75.83 | 74.24 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 74.07 | 73.22 |
| Zm00001d039094_P001 | Maize | cytosol | 72.51 | 73.08 |
| PGSC0003DMT400034973 | Potato | plasma membrane | 73.88 | 73.03 |
| HORVU1Hr1G090730.1 | Barley | peroxisome, plasma membrane, plastid | 71.93 | 71.24 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 71.15 | 70.19 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 70.96 | 70.13 |
| TraesCS6A01G177700.1 | Wheat | plastid | 77.58 | 69.46 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 82.65 | 68.72 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 77.19 | 68.63 |
| HORVU7Hr1G084610.6 | Barley | cytosol, mitochondrion, plastid | 78.56 | 67.17 |
| PGSC0003DMT400042065 | Potato | cytosol | 48.54 | 66.94 |
| PGSC0003DMT400009451 | Potato | cytosol, peroxisome, plasma membrane | 65.69 | 64.93 |
| PGSC0003DMT400062136 | Potato | cytosol, golgi, plasma membrane | 59.65 | 61.69 |
| PGSC0003DMT400014188 | Potato | endoplasmic reticulum, golgi, plasma membrane | 59.26 | 61.66 |
| PGSC0003DMT400032993 | Potato | plasma membrane | 59.26 | 61.29 |
| PGSC0003DMT400042071 | Potato | plasma membrane | 58.09 | 61.07 |
| PGSC0003DMT400041959 | Potato | endoplasmic reticulum, golgi, vacuole | 52.24 | 61.05 |
| PGSC0003DMT400037757 | Potato | plastid | 54.78 | 60.95 |
| PGSC0003DMT400028047 | Potato | plasma membrane | 62.57 | 60.0 |
| PGSC0003DMT400041960 | Potato | endoplasmic reticulum, golgi, vacuole | 51.46 | 58.93 |
| PGSC0003DMT400037714 | Potato | plasma membrane | 56.53 | 58.7 |
| PGSC0003DMT400019063 | Potato | cytosol, peroxisome, plasma membrane | 55.17 | 52.41 |
| PGSC0003DMT400049683 | Potato | endoplasmic reticulum, golgi | 41.33 | 47.64 |
| PGSC0003DMT400051894 | Potato | endoplasmic reticulum, plasma membrane | 39.96 | 45.35 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | EntrezGene:102600830 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 |
| InterPro:ACP_syn_III_C | InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 |
| GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | UniProt:M1CGV7 |
| PFAM:PF08392 | PFAM:PF08541 | EnsemblPlantsGene:PGSC0003DMG400026127 | PGSC:PGSC0003DMG400026127 | EnsemblPlants:PGSC0003DMT400067205 | PIRSF:PIRSF036417 |
| PANTHER:PTHR31561 | PANTHER:PTHR31561:SF19 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI000296202D |
| RefSeq:XP_006353644.1 | : | : | : | : | : |
Description
Beta-ketoacyl-coa synthase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026127]
Coordinates
chr6:+:46282144..46284653
Molecular Weight (calculated)
57905.9 Da
IEP (calculated)
9.374
GRAVY (calculated)
-0.046
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESKPEAPV NNPPPSYSRN FPDFKQSVKL KYVKLGYHYL ITHGMYLFLS PLVIVLAAQI STFSPSDLYI LWEQLRFNLI SVIICSTLLV FLSTLYFLTR
101: PRPVYLVNFS CYKPEDARLC TRKIFMERSK LVGSFPDETL EFQRKILERS GLGDSTYLPE AVLRVPPNPC MAEARKEAEM VMFGAIDELL AKTGIKPKDI
201: GILVVNCSLF NPTPSLSAMI VNHYKLRGNI VSYNLGGMGC SAGLISIDLA KDLLQVHPNT YALVLSMENI TLNWYFGTEK SMLLPNCLFR MGGAAVMLSN
301: KGSERRRSKY QLVHTVRTHK GSDDKCFSCV YQMEDPNGKV GVSLSKDLMA VAGDALKTNI TTLGPLVLPM SEQLLFFATL VGRKLLKMKI KPYIPDFRLA
401: FEHFCIHAGG RAVLDEIEKN LQLTDWHMEP SRMTLYRFGN TSSSSLWYEL AYSEAKGRIK RGDRTWQIAF GSGFKCNSAV WKALRSINPA KEKSPWMDEI
501: DQFPVDVPRV AKI
101: PRPVYLVNFS CYKPEDARLC TRKIFMERSK LVGSFPDETL EFQRKILERS GLGDSTYLPE AVLRVPPNPC MAEARKEAEM VMFGAIDELL AKTGIKPKDI
201: GILVVNCSLF NPTPSLSAMI VNHYKLRGNI VSYNLGGMGC SAGLISIDLA KDLLQVHPNT YALVLSMENI TLNWYFGTEK SMLLPNCLFR MGGAAVMLSN
301: KGSERRRSKY QLVHTVRTHK GSDDKCFSCV YQMEDPNGKV GVSLSKDLMA VAGDALKTNI TTLGPLVLPM SEQLLFFATL VGRKLLKMKI KPYIPDFRLA
401: FEHFCIHAGG RAVLDEIEKN LQLTDWHMEP SRMTLYRFGN TSSSSLWYEL AYSEAKGRIK RGDRTWQIAF GSGFKCNSAV WKALRSINPA KEKSPWMDEI
501: DQFPVDVPRV AKI
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.