Factsheet for PGSC0003DMT400034973

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005320.2.1	Tomato	plasma membrane	98.07	98.07
PGSC0003DMT400015633	Potato	plasma membrane	86.9	86.56
KRH34362	Soybean	plasma membrane	82.85	83.17
VIT_05s0020g04540.t01	Wine grape	plasma membrane	83.04	82.73
KRG92437	Soybean	plasma membrane	82.27	82.59
KRH69063	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	82.08	81.77
KRH31633	Soybean	endoplasmic reticulum, nucleus, plastid	80.73	81.04
PGSC0003DMT400067205	Potato	peroxisome	73.03	73.88
Os11t0591200-01	Rice	mitochondrion	61.27	73.61
PGSC0003DMT400019029	Potato	plasma membrane	71.29	73.27
PGSC0003DMT400042065	Potato	cytosol	50.48	70.43
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.24	68.7
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	67.63	68.69
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.63	68.55
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.63	68.42
Zm00001d048953_P001	Maize	mitochondrion, plastid	67.05	67.84
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	66.47	67.38
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	63.78	67.14
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	62.81	66.8
KXG28804	Sorghum	plastid	66.86	66.48
PGSC0003DMT400042071	Potato	plasma membrane	61.85	65.78
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	54.91	64.92
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	67.44	64.22
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	62.43	62.43
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	53.18	61.61
PGSC0003DMT400037757	Potato	plastid	53.56	60.3
PGSC0003DMT400032993	Potato	plasma membrane	57.23	59.88
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	61.08	59.59
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	56.65	59.27
PGSC0003DMT400028047	Potato	plasma membrane	60.5	58.69
PGSC0003DMT400037714	Potato	plasma membrane	54.53	57.29
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	55.11	52.96
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	41.62	48.54
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	39.5	45.35

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102594691	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1B1L5
PFAM:PF08392	PFAM:PF08541	EnsemblPlantsGene:PGSC0003DMG400013443	PGSC:PGSC0003DMG400013443	EnsemblPlants:PGSC0003DMT400034973	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002963968
RefSeq:XP_006356047.1	SEG:seg	:	:	:	:

Description

Acyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400013443]

Coordinates

chr3:-:370274..373324

Molecular Weight (calculated)

58605.9 Da

IEP (calculated)

9.192

GRAVY (calculated)

-0.023

Length

519 amino acids

Sequence
(BLAST)

001: MGDENNKNSV SSETARISVE VNNLPNFLQS IRLKYVKLGY HYLISNAMYL FLVPVLGLLC VHVMTISVDD LIQLLDKLKF NLVTVILCSA LVVFLGTLYF
101: MTRPRKVYLV DFSCYKPKPD VMCSKEVFME RSKQAGVFTE ENLAFQKKIL ERSGLGQKTY FPEALLRVPA EPNMAEARKE AEMVMFGAID ELLAKTGVKA
201: KDIGILVVNC SLFNPTPSLS AMIVNHYKLR GNVMSYNLGG MGCSAGLISI DLAKQLLQVN PNSYALVVSM ENITLNWYFG NNRSMLVSNC IFRMGGAAIL
301: LSNRSSDRRR SKYQLIHTVR THKGADDRSY GCVFQEEDEK KEIGVALSKD LMAVAGEALK TNITTLGPLV LPMSEQLLFF MTLVARKIFK MKIKPYIPDF
401: KLAFEHFCIH AGGRAVLDEL EKNLELSQWH MEPSRMTLYR FGNTSSSSLW YELAYTEAKG RIKKGDRTWQ IAFGSGFKCN SAVWRALKTI NPAKEKNPWM
501: DEVHEFPVEV PRMVTINDS

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.