Factsheet for PGSC0003DMT400028047

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009240.2.1	Tomato	peroxisome	94.77	95.84
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	78.5	79.25
Bra032621.1-P	Field mustard	plasma membrane	66.92	72.91
KRH68953	Soybean	cytosol, golgi, nucleus	69.35	70.0
PGSC0003DMT400019029	Potato	plasma membrane	62.24	65.94
GSMUA_Achr1P02540_001	Banana	cytosol	51.59	65.09
PGSC0003DMT400067205	Potato	peroxisome	60.0	62.57
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	61.87	62.22
PGSC0003DMT400042065	Potato	cytosol	43.18	62.1
TraesCS4D01G226100.1	Wheat	peroxisome	61.12	60.67
HORVU4Hr1G063420.1	Barley	peroxisome	61.68	60.55
PGSC0003DMT400034973	Potato	plasma membrane	58.69	60.5
PGSC0003DMT400015633	Potato	plasma membrane	58.88	60.46
TraesCS4A01G068400.1	Wheat	peroxisome	61.12	60.44
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	60.0	60.0
EER91722	Sorghum	peroxisome	59.81	59.81
TraesCS4B01G225500.1	Wheat	peroxisome	60.93	59.71
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	56.82	59.49
Zm00001d028406_P001	Maize	peroxisome	60.75	59.41
KXG39781	Sorghum	peroxisome	60.75	59.2
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	51.22	58.8
Zm00001d047931_P001	Maize	peroxisome	59.63	58.42
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	50.09	58.39
PGSC0003DMT400037757	Potato	plastid	49.16	57.05
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	46.36	56.49
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	54.77	56.45
PGSC0003DMT400032993	Potato	plasma membrane	51.78	55.85
PGSC0003DMT400042071	Potato	plasma membrane	50.65	55.53
PGSC0003DMT400037714	Potato	plasma membrane	51.22	55.47
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	51.03	55.04
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	45.42	54.24
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	49.72	53.96
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	50.09	49.63
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	38.13	45.84
CDY41551	Canola	golgi	51.03	43.4
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	51.59	43.33
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	36.07	42.7

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102603796	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1AQL5
PFAM:PF08392	PFAM:PF08541	EnsemblPlantsGene:PGSC0003DMG400010819	PGSC:PGSC0003DMG400010819	EnsemblPlants:PGSC0003DMT400028047	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002962612
RefSeq:XP_006361008.1	SEG:seg	:	:	:	:

Description

3-ketoacyl-CoA synthase 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400010819]

Coordinates

chr10:-:4868963..4871351

Molecular Weight (calculated)

60013.9 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.091

Length

535 amino acids

Sequence
(BLAST)

001: MANESIDMEK ERLTAEMNFK DSSSVVIKIR QKLPDFLQSV KLKYVKLGYG YSCNPLTLLL FATIFPIVTF TLIQLLTGLK LDRFYDTLTS DPTLLIINTS
101: TGLTGLIVLF FVLGVYYVKK PRPVYLVDFA CYKPEDERKI SVDSFLNMTE GNGAFEDETI VFQKKISHRS GLGDETYLPK GITSIPPNLN MKEARAEAEA
201: VMFGALDSLF SKTQIKPEEI GILIVNCSLF NPTPSLSSMI VNHYKLKTDI KSYNLGGMGC SAGLISIDLA KQLLKANQNS YAVVVSMENI TLNWYFGNDR
301: SMLLCNCIFR MGGAAMLLSN KSKDRTRSKY ELVHTVRTHK GADDNSYNCV YQREDDKGVV GVSLARELMA VAGDALKTNI TTLGPSVLPL TEQFRFFMTL
401: VKRKLLKAKV KPYIPDFKLA FEHFCIHAGG RAVLDEIQNN LSLSDWHMEP SRMTLHRFGN TSSSSLWYEL AYTESKGRVK KGDRVWQIAF GSGFKCNSAV
501: WKSLKVIDSN EVNANGNPWA DCIQRYPVKV ALAKQ

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.