Factsheet for PGSC0003DMT400014188

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	97.57	97.57
PGSC0003DMT400042071	Potato	plasma membrane	78.9	79.71
PGSC0003DMT400042065	Potato	cytosol	59.84	79.3
CDX94721	Canola	cytosol	53.96	67.17
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	58.42	65.6
CDY63070	Canola	cytosol	48.28	64.67
PGSC0003DMT400015633	Potato	plasma membrane	67.55	63.92
PGSC0003DMT400034973	Potato	plasma membrane	67.14	63.78
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	57.2	62.95
CDX89834	Canola	plasma membrane	65.11	61.61
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	65.31	60.87
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	64.91	60.84
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	65.11	60.68
CDY18212	Canola	plasma membrane	65.11	60.68
Bra035992.1-P	Field mustard	plasma membrane	64.71	60.65
PGSC0003DMT400019029	Potato	plasma membrane	62.07	60.59
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	64.71	60.53
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	64.5	60.46
Os11t0591200-01	Rice	mitochondrion	52.94	60.42
AT1G04220.1	Thale cress	plasma membrane	64.3	60.04
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	61.66	59.49
PGSC0003DMT400067205	Potato	peroxisome	61.66	59.26
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.42	56.69
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.42	56.14
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.22	56.05
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.22	56.05
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	58.22	55.3
PGSC0003DMT400032993	Potato	plasma membrane	55.58	55.24
Zm00001d048953_P001	Maize	mitochondrion, plastid	57.4	55.17
KXG28804	Sorghum	plastid	57.4	54.21
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	54.36	54.03
PGSC0003DMT400037757	Potato	plastid	49.9	53.36
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	52.74	53.28
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	58.42	52.84
PGSC0003DMT400037714	Potato	plasma membrane	51.52	51.42
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	48.28	50.96
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	54.97	50.94
KRH57768	Soybean	plasma membrane	47.87	50.32
PGSC0003DMT400028047	Potato	plasma membrane	53.96	49.72
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	53.14	48.52
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	39.76	44.04
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	38.74	42.26

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102590104	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1A3U0
PFAM:PF08392	PFAM:PF08541	EnsemblPlantsGene:PGSC0003DMG400005563	PGSC:PGSC0003DMG400005563	EnsemblPlants:PGSC0003DMT400014188	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002948950
RefSeq:XP_006348760.1	:	:	:	:	:

Description

Acyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400005563]

Coordinates

chr5:+:29394..32179

Molecular Weight (calculated)

55306.3 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.013

Length

493 amino acids

Sequence
(BLAST)

001: MAQNSPNGEI KSSNLPNFLL SVRLKYVKLG YHYLISNAIY LVIVPILVAV GLHLSTLTLE DLMTNLVMLK SYSTLVVFLG TVYFMSRPRN VYLVDFSCYK
101: PHERYMISKE RLVEKLTDIF DESSLNFQKK ILYNSGLSDK TYIPVDKWIP SNFSLSSNQH QAKLVIIGAI DDLLAKTGVK IRDIGFIIVN SSMFNPTPSL
201: SAMVVNHYKL GVNVITYNLG GMGCSAGLIS VDLANRLLQG QANSYALIVS TEIVSSAFYT GNDKSKLIPN MIFRMGASAV LLSNRFSDRR RSKYQLMHVV
301: RTHKGADDRA FSCVFQDEEE DGKKGMSLSK DLMAVAGEAL KTNITTLGPL VLPMSEQLLF FVSLIARNVF KRKIKPYIPD FKMAFEHFCI HAGGRAVLDE
401: LQKNLDLSEA LMEPSRMTLY RFGNTSSSSV WYNLAYSEAK GRIKKGDRAW QIGFGSGFKC NSAVWRALRT VNPVKEKNAW TDEIDDFPAQ VSR

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.