Factsheet for PGSC0003DMT400042071

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053870.2.1	Tomato	mitochondrion	92.21	92.59
PGSC0003DMT400042065	Potato	cytosol	65.78	86.29
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	79.71	78.9
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	59.22	65.83
CDX94721	Canola	cytosol	53.07	65.4
CDY63070	Canola	cytosol	47.54	63.04
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	57.79	62.95
PGSC0003DMT400015633	Potato	plasma membrane	66.6	62.38
PGSC0003DMT400034973	Potato	plasma membrane	65.78	61.85
Os11t0591200-01	Rice	mitochondrion	53.07	59.95
CDX89834	Canola	plasma membrane	63.73	59.69
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	64.14	59.51
PGSC0003DMT400019029	Potato	plasma membrane	61.48	59.41
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	64.34	59.36
Bra035992.1-P	Field mustard	plasma membrane	63.93	59.32
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	63.93	59.2
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	63.93	58.98
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	63.52	58.94
AT1G04220.1	Thale cress	plasma membrane	63.73	58.9
CDY18212	Canola	plasma membrane	63.73	58.79
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	61.07	58.32
PGSC0003DMT400067205	Potato	peroxisome	61.07	58.09
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	57.79	55.51
PGSC0003DMT400032993	Potato	plasma membrane	56.15	55.24
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	57.79	55.08
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	55.94	55.04
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	57.79	54.97
Zm00001d048953_P001	Maize	mitochondrion, plastid	57.58	54.78
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	57.17	54.49
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	57.38	53.95
KXG28804	Sorghum	plastid	57.38	53.64
PGSC0003DMT400037757	Potato	plastid	50.2	53.15
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	52.25	52.25
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	57.79	51.74
PGSC0003DMT400037714	Potato	plasma membrane	51.64	51.01
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	55.53	50.94
PGSC0003DMT400028047	Potato	plasma membrane	55.53	50.65
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	47.54	49.68
KRH57768	Soybean	plasma membrane	47.54	49.47
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	53.07	47.96
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	40.37	44.27
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	39.14	42.26

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102581538	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1BCG2
PFAM:PF08392	PFAM:PF08541	EnsemblPlantsGene:PGSC0003DMG400016316	PGSC:PGSC0003DMG400016316	EnsemblPlants:PGSC0003DMT400042071	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002959FD3
RefSeq:XP_006350730.1	SEG:seg	:	:	:	:

Description

Acyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400016316]

Coordinates

chr6:+:40062712..40064260

Molecular Weight (calculated)

55153.3 Da

IEP (calculated)

9.144

GRAVY (calculated)

0.009

Length

488 amino acids

Sequence
(BLAST)

001: MAENAPNLPN FLLSVRLKYA KLGYHYLISN AIYLLIVPIL VAMLLHLSTL TIEDLMNHFA MLKSCSTLVV FFATVYFMSR PRNVYLVDFS CYKPHERFMM
101: SKQLMIENMS NIFDEESLMF QKKILERSGL GDKTYIPIDT IPFKYTFSSY LNEAEEEICG AIDDLLAKTR VKIGDIGIII VNSSAFNPSP SLSSMIVNHY
201: KLGVNVITYN LGGMGCSAGL ISVDLANRLL QGQANTYALI VSAEIVSSAF YIGKQRSRLL PNCLFRMGSS AILLSNRSSD RPRSKYQLMH VVRTHKGADD
301: RAYRCAYIDE DENGKRSVLL SKDLMAVAGE ALKTNITTLG PLVLPMSEQL LFFASLIARK VFERKMKPYI PDFKMAFEHF CIHAGGRAVL DELQKNLDLP
401: EFLMEPSRMT LYRFGNTSSS SIWYNLAYSE AKGRIKKGDR VWQIGFGSGF KCNSVVWRAL RAVDAAKQKN PWTDEIQDFP VHRSHLDA

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.