Factsheet for Solyc06g053870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
peroxisome 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042071	Potato	plasma membrane	92.59	92.21
PGSC0003DMT400042065	Potato	cytosol	65.43	85.48
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	77.98	76.88
CDX94721	Canola	cytosol	54.12	66.41
CDY63070	Canola	cytosol	48.56	64.13
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	63.58	62.42
Solyc09g083050.2.1	Tomato	plasma membrane	65.02	61.6
Solyc03g005320.2.1	Tomato	plasma membrane	64.81	60.69
Os11t0591200-01	Rice	mitochondrion	53.7	60.42
Solyc08g067410.1.1	Tomato	plasma membrane	61.52	59.21
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	63.58	58.75
Bra035992.1-P	Field mustard	plasma membrane	63.37	58.56
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	63.37	58.44
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	63.58	58.41
CDX89834	Canola	plasma membrane	62.55	58.35
Solyc12g006820.1.1	Tomato	plasma membrane	59.88	58.2
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	62.96	58.17
CDY18212	Canola	plasma membrane	62.76	57.66
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	62.76	57.66
AT1G04220.1	Thale cress	plasma membrane	62.55	57.58
Solyc06g065560.1.1	Tomato	nucleus	60.7	57.5
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.44	55.91
Zm00001d048953_P001	Maize	mitochondrion, plastid	58.44	55.36
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.23	55.27
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.23	55.17
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	57.61	54.69
KXG28804	Sorghum	plastid	58.23	54.21
Solyc02g085870.2.1	Tomato	plasma membrane	54.73	53.63
Solyc02g063140.2.1	Tomato	golgi	54.53	53.43
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	56.79	53.38
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	52.26	52.05
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	58.23	51.93
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	55.97	51.13
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	51.44	50.61
Solyc10g009240.2.1	Tomato	peroxisome	54.73	50.28
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	53.29	49.9
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	47.94	49.89
KRH57768	Soybean	plasma membrane	47.53	49.25
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	47.74	45.85
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	40.74	43.9
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	39.71	43.67

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4C674	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc06g053870.2
EnsemblPlants:Solyc06g053870.2.1	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002765968	SEG:seg	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:K4C674]

Coordinates

chr6:+:36760297..36762083

Molecular Weight (calculated)

55016.0 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.042

Length

486 amino acids

Sequence
(BLAST)

001: MAQNAPNYAQ LHQIKYVKLG YHYLISNAIY LLIVPILVAM LLHLSALTIE DLMNHFTMLK SCSPLVVFLA TVYFMSRPRN VYLVDFSCYK PHERFMMSKQ
101: LAIENMSNIF DDESLIFQKK ILERSGLGDK TYIPIDTIPF KYTFSSYVNE AEEGIFGAID DLLAKTRVKI RDIGIIIVNS SLFNPSPSLS SMIVNHYKLG
201: VHVITYNLGG MGCSAGLISV DLANRLLQGQ ANNTYALIVS AEIVSTGFYI GKQRSRLLPN CLFRMGSSAV LLSNRSSDRR CSKYQLMRVV RTHKGADDRA
301: YRCAYIDEDE NGKTSVSLSK DLMAVAGEAL KTNITTLGPL VLPMSEQLLF FASLIARKVF KRKRKPYIPD FKMAFEHFCI HAGGRAVLDE LQKNLDLPEF
401: LMEPSRMTLY RFGNTSSSSI WYNLAYSEAK GRIKKGDRVW QIGFGSGFKC NSVVWRALRT VDADKEKNPW TDEIQDFPVH RSHLDA

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.