Factsheet for Solyc04g080450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
golgi 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	98.45	98.07
AT1G19440.1	Thale cress	golgi, peroxisome, plasma membrane	83.37	83.53
CDY21665	Canola	plasma membrane	81.82	82.94
Bra031081.1-P	Field mustard	plasma membrane	81.62	82.58
CDX81929	Canola	plasma membrane	81.43	82.55
Bra025738.1-P	Field mustard	plasma membrane	80.08	81.82
CDY29431	Canola	plasma membrane	76.6	81.82
KRH15203	Soybean	plasma membrane	80.46	81.57
CDY26665	Canola	cytosol, peroxisome, plasma membrane	77.95	81.41
KRH05829	Soybean	cytosol, peroxisome, plasma membrane	80.27	80.9
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	64.41	78.91
Zm00001d009608_P001	Maize	plasma membrane	76.79	78.61
Os05t0568000-02	Rice	plasma membrane	77.95	78.4
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	70.02	78.36
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	78.53	78.08
Zm00001d039053_P001	Maize	plasma membrane	77.56	78.02
TraesCS1A01G406200.1	Wheat	plasma membrane	76.98	76.25
TraesCS1D01G414600.1	Wheat	peroxisome	76.98	75.81
TraesCS1B01G436300.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.98	75.81
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	68.67	75.37
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	58.8	72.55
HORVU1Hr1G089710.3	Barley	plastid	76.79	67.4
Solyc08g067410.1.1	Tomato	plasma membrane	64.99	66.53
Solyc12g006820.1.1	Tomato	plasma membrane	63.06	65.2
Solyc06g065560.1.1	Tomato	nucleus	64.6	65.11
Solyc09g083050.2.1	Tomato	plasma membrane	64.41	64.91
Solyc02g085870.2.1	Tomato	plasma membrane	59.96	62.5
Solyc03g005320.2.1	Tomato	plasma membrane	62.09	61.85
Solyc02g063140.2.1	Tomato	golgi	58.8	61.29
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	56.67	59.31
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	58.41	58.19
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	54.93	57.61
Solyc06g053870.2.1	Tomato	mitochondrion	53.38	56.79
Solyc10g009240.2.1	Tomato	peroxisome	55.71	54.44
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	52.22	53.36
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	50.48	52.73
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	36.56	42.76
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	36.36	41.69

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
ncoils:Coil	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4BVC4
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901
EnsemblPlantsGene:Solyc04g080450.1	EnsemblPlants:Solyc04g080450.1.1	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002765884	:

Description

3-ketoacyl-CoA synthase 4 [Source:Projected from Arabidopsis thaliana (AT1G19440) UniProtKB/Swiss-Prot;Acc:Q9LN49]

Coordinates

chr4:+:64626193..64627746

Molecular Weight (calculated)

57739.4 Da

IEP (calculated)

9.616

GRAVY (calculated)

-0.084

Length

517 amino acids

Sequence
(BLAST)

001: MNGATGTQVN TANGGGGEPV GVQIQQSRRL PDFLQSVNLK YVKLGYHYLI SHLLTLCLIP VMAVILIEAS QMNPDDIRQL WLHLQYNLVS VIICSAVLVF
101: GSTVYIMTRP RPVYLIDYSC YKAPEHLKAP YERFMQHSRL TGDFDESSLE FQRKILERSG LGDETYVPEA MHQLPPQPSM QAAREEAEQV MFGALDKLFA
201: NTSVKPKKIG VLVVNCSLFN PTPSLSAMIV NKYKLRGNIR SFNLGGMGCS AGVIAVDLAK DMLQVHRNTY AVVVSTENIT QNWYFGNKKS MLIPNCLFRV
301: GGSAVLLSNK SVDRRRAKYK LVHVVRTHRG ADDKAFRCVY QEQDDAGKTG VSLSKDLMAI AGGALKTNIT TLGPLVLPIS EQLLFFGSLI IKKIFNKHIK
401: PYIPDFKLAF DHFCIHAGGR AVIDELEKNL QLTQVHVEAS RMTLHRFGNT SSSSIWYELA YIEAKGRMKK GNKVWQIAFG SGFKCNSAVW QALRNVKPSP
501: DGPWEDCIDR YPVKVVS

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.