Factsheet for AT1G19440.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26665	Canola	cytosol, peroxisome, plasma membrane	90.5	94.34
Bra025738.1-P	Field mustard	plasma membrane	91.67	93.48
CDY29431	Canola	plasma membrane	87.6	93.39
Bra031081.1-P	Field mustard	plasma membrane	92.05	92.95
CDY21665	Canola	plasma membrane	91.67	92.75
CDX81929	Canola	plasma membrane	91.67	92.75
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	83.53	83.37
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	83.72	83.24
KRH15203	Soybean	plasma membrane	78.68	79.61
KRH05829	Soybean	cytosol, peroxisome, plasma membrane	78.88	79.34
Zm00001d009608_P001	Maize	plasma membrane	76.16	77.82
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	69.38	77.49
Os05t0568000-02	Rice	plasma membrane	76.94	77.24
AT2G16280.1	Thale cress	golgi, peroxisome, plasma membrane	76.16	76.76
Zm00001d039053_P001	Maize	plasma membrane	76.36	76.65
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	76.94	76.35
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	61.63	75.36
TraesCS1A01G406200.1	Wheat	plasma membrane	75.97	75.1
TraesCS1D01G414600.1	Wheat	peroxisome	76.16	74.86
TraesCS1B01G436300.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.16	74.86
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	66.67	73.04
AT4G34510.1	Thale cress	plasma membrane	67.83	71.87
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	56.4	69.45
HORVU1Hr1G089710.3	Barley	plastid	76.36	66.89
AT2G26640.1	Thale cress	plasma membrane	64.34	65.23
AT2G15090.1	Thale cress	golgi	57.75	61.95
AT4G34520.1	Thale cress	golgi	60.66	61.86
AT1G68530.1	Thale cress	plasma membrane	59.3	61.57
AT4G34250.1	Thale cress	endoplasmic reticulum, golgi	58.53	61.26
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	62.79	61.25
AT1G25450.1	Thale cress	plasma membrane	58.14	60.98
AT1G04220.1	Thale cress	plasma membrane	61.63	60.23
AT1G01120.1	Thale cress	plasma membrane	56.4	55.11
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	49.42	54.72
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	48.64	54.68
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	56.78	53.27
AT1G71160.1	Thale cress	endoplasmic reticulum, plasma membrane	41.47	46.52
AT5G49070.1	Thale cress	plasma membrane, vacuole	39.53	43.97

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:838528
ProteinID:AAF79428.1	InterPro:ACP_syn_III_C	ProteinID:AEE29852.1	ArrayExpress:AT1G19440	EnsemblPlantsGene:AT1G19440	RefSeq:AT1G19440
TAIR:AT1G19440	RefSeq:AT1G19440-TAIR-G	EnsemblPlants:AT1G19440.1	TAIR:AT1G19440.1	EMBL:BT033044	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	GO:GO:0102336	GO:GO:0102337	GO:GO:0102338	GO:GO:0102756
InterPro:IPR016039	Symbol:KCS4	RefSeq:NP_173376.1	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PO:PO:0000013	PO:PO:0000014	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR31561
PANTHER:PTHR31561:SF65	UniProt:Q9LN49	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI00000A152E
SEG:seg	:	:	:	:	:

Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]

Coordinates

chr1:+:6728747..6730931

Molecular Weight (calculated)

57845.3 Da

IEP (calculated)

9.080

GRAVY (calculated)

-0.054

Length

516 amino acids

Sequence
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.