Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034298.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 91.64 | 96.0 |
| CDY35309 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 95.64 | 95.81 |
| CDX77038 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 92.18 | 95.3 |
| CDY11498 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 94.91 | 95.26 |
| Bra007766.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 94.73 | 95.25 |
| CDX76724 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 93.64 | 94.15 |
| KRH61616 | Soybean | nucleus | 76.55 | 78.54 |
| KRH52284 | Soybean | nucleus | 76.36 | 78.5 |
| VIT_04s0008g02250.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 74.73 | 77.55 |
| GSMUA_Achr6P11690_001 | Banana | cytosol, peroxisome, plastid | 67.45 | 76.18 |
| GSMUA_Achr3P02010_001 | Banana | golgi, peroxisome, plastid | 60.91 | 75.11 |
| Solyc08g067260.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 69.09 | 75.1 |
| PGSC0003DMT400019063 | Potato | cytosol, peroxisome, plasma membrane | 73.45 | 74.81 |
| TraesCS4A01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 70.0 | 71.3 |
| EER95395 | Sorghum | cytosol, peroxisome, plasma membrane | 70.36 | 71.27 |
| TraesCS4B01G297500.1 | Wheat | golgi | 69.82 | 71.11 |
| TraesCS4D01G296400.1 | Wheat | cytosol, peroxisome, plasma membrane | 69.82 | 71.11 |
| Zm00001d027904_P001 | Maize | plastid | 70.18 | 71.09 |
| Os03t0181500-01 | Rice | plasma membrane | 70.0 | 71.03 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 56.55 | 69.73 |
| HORVU4Hr1G076940.1 | Barley | mitochondrion, peroxisome, plastid | 53.45 | 67.12 |
| AT1G19440.1 | Thale cress | golgi, peroxisome, plasma membrane | 53.27 | 56.78 |
| AT2G26640.1 | Thale cress | plasma membrane | 51.45 | 55.6 |
| AT4G34510.1 | Thale cress | plasma membrane | 48.91 | 55.24 |
| AT2G16280.1 | Thale cress | golgi, peroxisome, plasma membrane | 50.73 | 54.49 |
| AT1G68530.1 | Thale cress | plasma membrane | 49.09 | 54.33 |
| AT5G43760.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 51.27 | 53.31 |
| AT1G04220.1 | Thale cress | plasma membrane | 50.36 | 52.46 |
| AT1G25450.1 | Thale cress | plasma membrane | 46.91 | 52.44 |
| AT1G01120.1 | Thale cress | plasma membrane | 49.82 | 51.89 |
| AT3G10280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 39.82 | 47.71 |
| AT2G46720.1 | Thale cress | endoplasmic reticulum, plasma membrane | 40.36 | 47.64 |
| AT2G15090.1 | Thale cress | golgi | 41.27 | 47.19 |
| AT4G34250.1 | Thale cress | endoplasmic reticulum, golgi | 41.64 | 46.45 |
| AT4G34520.1 | Thale cress | golgi | 42.36 | 46.05 |
| AT5G49070.1 | Thale cress | plasma membrane, vacuole | 35.09 | 41.59 |
| AT1G71160.1 | Thale cress | endoplasmic reticulum, plasma membrane | 34.55 | 41.3 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | MapMan:5.1.6.1.1 | EntrezGene:817165 | UniProt:A0A178VYA3 |
| ProteinID:AAC14526.1 | ProteinID:AAF73973.1 | ProteinID:AAF73974.1 | ProteinID:AAF73975.1 | ProteinID:AAF73976.1 | ProteinID:AAF73977.1 |
| ProteinID:AAF73978.1 | ProteinID:AAF73979.1 | ProteinID:AAF73980.1 | ProteinID:AAF73981.1 | InterPro:ACP_syn_III_C | ProteinID:AEC07813.1 |
| EMBL:AF337910 | EMBL:AK220796 | ArrayExpress:AT2G26250 | EnsemblPlantsGene:AT2G26250 | RefSeq:AT2G26250 | TAIR:AT2G26250 |
| RefSeq:AT2G26250-TAIR-G | EnsemblPlants:AT2G26250.1 | TAIR:AT2G26250.1 | EMBL:AY039563 | EMBL:AY149961 | EMBL:BT002360 |
| ProteinID:CAA09311.1 | ncoils:Coil | InterPro:FAE1_typ3_polyketide_synth | Symbol:FDH | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0006629 | GO:GO:0006633 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009409 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | GO:GO:0080167 | GO:GO:0102336 | GO:GO:0102337 |
| GO:GO:0102338 | GO:GO:0102756 | InterPro:IPR016039 | RefSeq:NP_180193.1 | ProteinID:OAP11290.1 | PFAM:PF08392 |
| PFAM:PF08541 | PIRSF:PIRSF036417 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF2 | UniProt:Q570B4 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI00000472FF |
| SEG:seg | : | : | : | : | : |
Description
FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
Coordinates
chr2:-:11170416..11173278
Molecular Weight (calculated)
61964.6 Da
IEP (calculated)
9.340
GRAVY (calculated)
-0.199
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.