Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G297500.1 | Wheat | golgi | 99.81 | 99.81 |
| TraesCS4D01G296400.1 | Wheat | cytosol, peroxisome, plasma membrane | 99.81 | 99.81 |
| EER95395 | Sorghum | cytosol, peroxisome, plasma membrane | 95.0 | 94.48 |
| Zm00001d027904_P001 | Maize | plastid | 94.63 | 94.11 |
| Os03t0181500-01 | Rice | plasma membrane | 94.44 | 94.1 |
| HORVU4Hr1G076940.1 | Barley | mitochondrion, peroxisome, plastid | 72.96 | 89.95 |
| GSMUA_Achr6P11690_001 | Banana | cytosol, peroxisome, plastid | 72.41 | 80.29 |
| GSMUA_Achr3P02010_001 | Banana | golgi, peroxisome, plastid | 65.56 | 79.37 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 61.85 | 74.89 |
| KRH61616 | Soybean | nucleus | 72.04 | 72.57 |
| KRH52284 | Soybean | nucleus | 71.85 | 72.52 |
| VIT_04s0008g02250.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 70.19 | 71.51 |
| CDX77038 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 69.26 | 70.3 |
| Solyc08g067260.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 65.74 | 70.16 |
| AT2G26250.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 71.3 | 70.0 |
| PGSC0003DMT400019063 | Potato | cytosol, peroxisome, plasma membrane | 69.63 | 69.63 |
| CDY35309 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 70.74 | 69.58 |
| Bra007766.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 70.19 | 69.29 |
| CDY11498 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 70.19 | 69.16 |
| Bra034298.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 67.22 | 69.14 |
| CDX76724 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 69.81 | 68.92 |
| TraesCS1A01G406200.1 | Wheat | plasma membrane | 55.37 | 57.28 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 51.85 | 53.85 |
| TraesCS4A01G065300.1 | Wheat | mitochondrion, plasma membrane | 48.52 | 52.82 |
| TraesCS7A01G372300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 51.3 | 52.66 |
| TraesCS7A01G032900.1 | Wheat | cytosol | 32.22 | 50.29 |
| TraesCS4A01G068400.1 | Wheat | peroxisome | 49.63 | 49.54 |
| TraesCS6A01G073300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 45.56 | 48.43 |
| TraesCS4A01G164400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 45.56 | 48.05 |
| TraesCS6A01G177700.1 | Wheat | plastid | 50.93 | 47.99 |
| TraesCS1A01G392800.1 | Wheat | plasma membrane | 40.93 | 47.53 |
| TraesCS6A01G293700.1 | Wheat | golgi, plasma membrane | 41.85 | 46.69 |
| TraesCS4A01G025300.1 | Wheat | golgi | 42.04 | 44.6 |
| TraesCS6A01G415500.2 | Wheat | mitochondrion | 41.48 | 44.36 |
| TraesCS1A01G040900.1 | Wheat | golgi | 39.26 | 44.35 |
| TraesCS3A01G451100.1 | Wheat | plasma membrane | 40.0 | 44.17 |
| TraesCS7A01G205700.1 | Wheat | golgi | 40.0 | 43.99 |
| TraesCS4A01G456600.1 | Wheat | plasma membrane | 36.85 | 43.93 |
| TraesCS1A01G369100.1 | Wheat | golgi | 40.37 | 43.25 |
| TraesCS1A01G037600.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 39.07 | 43.24 |
| TraesCS7A01G532300.1 | Wheat | golgi | 37.96 | 42.8 |
| TraesCS7A01G108300.1 | Wheat | plasma membrane | 35.19 | 42.41 |
| TraesCS4A01G303900.1 | Wheat | plasma membrane | 38.52 | 42.28 |
| TraesCS4A01G031500.1 | Wheat | plasma membrane | 37.59 | 42.03 |
| TraesCS7A01G206000.1 | Wheat | golgi | 38.33 | 41.99 |
| TraesCS6A01G341400.1 | Wheat | golgi | 39.07 | 41.95 |
| TraesCS6A01G025200.1 | Wheat | plasma membrane | 37.59 | 41.68 |
| TraesCS7A01G532200.1 | Wheat | cytosol | 7.96 | 41.35 |
| TraesCS6A01G024400.1 | Wheat | plasma membrane | 37.22 | 41.1 |
| TraesCS3A01G279400.1 | Wheat | plasma membrane | 36.85 | 40.7 |
| TraesCS7A01G205800.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 33.89 | 40.67 |
| TraesCS2A01G014600.1 | Wheat | plasma membrane | 36.85 | 40.12 |
| TraesCS5A01G076500.1 | Wheat | golgi | 35.74 | 39.31 |
| TraesCS2A01G507700.1 | Wheat | golgi, plasma membrane | 32.59 | 38.43 |
| TraesCS7A01G107900.1 | Wheat | golgi, mitochondrion | 33.7 | 38.16 |
| TraesCS1A01G439000.1 | Wheat | plasma membrane | 34.44 | 37.2 |
| TraesCS7A01G108000.1 | Wheat | golgi, plasma membrane, plastid | 32.78 | 36.88 |
| TraesCS7A01G107700.1 | Wheat | mitochondrion, plastid | 33.33 | 36.22 |
| TraesCS1A01G413000.1 | Wheat | golgi | 6.48 | 15.84 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C | InterPro:FAE1_typ3_polyketide_synth |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016740 | GO:GO:0016747 | GO:GO:0080167 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 |
| PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF2 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like |
| EnsemblPlantsGene:TraesCS4A01G007400 | EnsemblPlants:TraesCS4A01G007400.1 | TIGR:cd00831 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:4775728..4779317
Molecular Weight (calculated)
60174.4 Da
IEP (calculated)
9.507
GRAVY (calculated)
-0.114
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREELSTEI VNRGVEPSGP DAGSPTFSVR VRRRLPDFLQ SVNLKYVRLG YHYLLSHGVY LATIPVIVLV CGAEVGSLSR DELWRKVWDE ATYDLATVLA
101: FLAVLAFTIS VYIMSRPRPI YLIDFATYKP ADELKVSKAE FIELARKSGK FDEESLAFQA RLLAKSGIGD ESYMPRCVFQ PDANCATMKE GRAEASAAMF
201: AALDELFDKC RVRPKDVGVL VVNCSLFNPT PSLSAMIVNH YKMRGNILSY NLGGMGCSAG VISIDLARDM LQASGAGLAV VVSTEAVSFT WYAGKRRSML
301: IPNAFFRAGA AAVLLSNRRR DFRRAKYQLE HVVRTHKGAD DRAFRSVYQE EDEQRIKGLS ISRDLVEVGG HALKTNITTL GPLVLPFSEQ LLFFAGVLFR
401: HLYPSKTSTP PPPAANGDTS AAAPYIPDFK RAFEHFCMHA ASRDVLEHLQ RNLGLRDADL EASRAALHRF GNTSSSSIWY ELAYLEAKGR VRRGDRVWQL
501: AFGSGFKCNS AVWRAVRRVR RPSRSPWLDC VDQYPARMDA
101: FLAVLAFTIS VYIMSRPRPI YLIDFATYKP ADELKVSKAE FIELARKSGK FDEESLAFQA RLLAKSGIGD ESYMPRCVFQ PDANCATMKE GRAEASAAMF
201: AALDELFDKC RVRPKDVGVL VVNCSLFNPT PSLSAMIVNH YKMRGNILSY NLGGMGCSAG VISIDLARDM LQASGAGLAV VVSTEAVSFT WYAGKRRSML
301: IPNAFFRAGA AAVLLSNRRR DFRRAKYQLE HVVRTHKGAD DRAFRSVYQE EDEQRIKGLS ISRDLVEVGG HALKTNITTL GPLVLPFSEQ LLFFAGVLFR
401: HLYPSKTSTP PPPAANGDTS AAAPYIPDFK RAFEHFCMHA ASRDVLEHLQ RNLGLRDADL EASRAALHRF GNTSSSSIWY ELAYLEAKGR VRRGDRVWQL
501: AFGSGFKCNS AVWRAVRRVR RPSRSPWLDC VDQYPARMDA
001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL
Arabidopsis Description
FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.