Factsheet for TraesCS4D01G296400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

peroxisome 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G297500.1	Wheat	golgi	100.0	100.0
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	99.81	99.81
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	95.19	94.66
Zm00001d027904_P001	Maize	plastid	94.81	94.29
Os03t0181500-01	Rice	plasma membrane	94.63	94.28
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	73.15	90.18
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	72.22	80.08
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	65.37	79.15
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	61.67	74.66
KRH61616	Soybean	nucleus	71.85	72.39
KRH52284	Soybean	nucleus	71.67	72.34
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	70.0	71.32
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	69.44	70.49
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	65.56	69.96
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	71.11	69.82
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.93	69.76
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	70.37	69.47
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	69.44	69.44
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	70.37	69.34
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	67.22	69.14
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.0	69.1
TraesCS1D01G414600.1	Wheat	peroxisome	55.56	57.14
TraesCS1D01G420900.1	Wheat	peroxisome	52.04	54.14
TraesCS7D01G350500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	51.85	53.74
TraesCS4D01G242200.1	Wheat	mitochondrion, plasma membrane	48.33	52.62
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	50.93	52.48
TraesCS4D01G226100.1	Wheat	peroxisome	49.63	49.72
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	46.11	48.63
TraesCS1D01G401000.1	Wheat	plasma membrane	40.56	47.2
TraesCS7D01G208600.1	Wheat	cytosol	33.33	47.12
TraesCS6D01G274600.1	Wheat	golgi, plasma membrane	41.48	46.28
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	46.11	45.69
TraesCS4D01G008100.1	Wheat	plasma membrane	35.93	45.33
TraesCS1D01G042300.1	Wheat	golgi	39.44	44.56
TraesCS7D01G102300.1	Wheat	mitochondrion	23.89	44.48
TraesCS7D01G029500.1	Wheat	plasma membrane	37.41	44.2
TraesCS4D01G277300.1	Wheat	golgi	41.3	43.81
TraesCS3D01G444000.1	Wheat	golgi	39.63	43.76
TraesCS2D01G508000.1	Wheat	mitochondrion	25.74	43.71
TraesCS7D01G519400.1	Wheat	plasma membrane	38.7	43.63
TraesCS1D01G374700.1	Wheat	plasma membrane	40.74	43.39
TraesCS7D01G519300.1	Wheat	golgi, plasma membrane	38.33	43.31
TraesCS7D01G208500.1	Wheat	golgi	39.44	43.12
TraesCS7D01G209400.1	Wheat	cytosol	29.81	43.05
TraesCS1D01G039200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	38.52	42.8
TraesCS7D01G035700.1	Wheat	plasma membrane	38.33	42.68
TraesCS7D01G089200.1	Wheat	endoplasmic reticulum, plasma membrane	36.67	41.86
TraesCS4D01G273400.1	Wheat	endoplasmic reticulum	37.04	41.41
TraesCS7D01G208800.1	Wheat	endoplasmic reticulum	36.85	41.03
TraesCS6D01G321600.1	Wheat	golgi	38.15	40.95
TraesCS7D01G208700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	35.0	40.91
TraesCS3D01G279300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	36.48	40.45
TraesCS5D01G089800.1	Wheat	golgi	36.11	39.88
TraesCS7D01G102800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	33.15	39.87
TraesCS2D01G508200.1	Wheat	plasma membrane, plastid	32.78	38.65
TraesCS4D01G008200.1	Wheat	plasma membrane	35.0	38.41
TraesCS2D01G508300.1	Wheat	endoplasmic reticulum, plasma membrane	32.59	38.18
TraesCS7D01G102900.1	Wheat	golgi, plasma membrane, plastid	33.15	37.29
TraesCS7D01G102400.1	Wheat	endoplasmic reticulum, plastid, vacuole	32.96	37.08
TraesCS7D01G102000.1	Wheat	mitochondrion, plastid	32.96	35.81
TraesCS5D01G017000.1	Wheat	endoplasmic reticulum, golgi, plastid	30.0	34.32
TraesCS1D01G420600.2	Wheat	cytosol	6.48	15.84

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0016747	GO:GO:0080167	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541
PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like
EnsemblPlantsGene:TraesCS4D01G296400	EnsemblPlants:TraesCS4D01G296400.1	TIGR:cd00831	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:465769256..465772747

Molecular Weight (calculated)

60160.4 Da

IEP (calculated)

9.507

GRAVY (calculated)

-0.114

Length

540 amino acids

Sequence
(BLAST)

001: MAREELSTEI VNRGVEPSGP DAGSPTFSVR VRRRLPDFLQ SVNLKYVRLG YHYLLSHGVY LATIPVIVLV CGAEVGSLSR DELWRKVWDE ATYDLATVLA
101: FLAVLAFTIS VYIMSRPRPI YLIDFATYKP ADELKVSKAE FIDLARKSGK FDEESLAFQA RLLAKSGIGD ESYMPRCVFQ PDANCATMKE GRAEASAAMF
201: AALDELFDKC RVRPKDVGVL VVNCSLFNPT PSLSAMIVNH YKMRGNILSY NLGGMGCSAG VISIDLARDM LQASGAGLAV VVSTEAVSFT WYAGKRRSML
301: IPNAFFRAGA AAVLLSNRRR DFRRAKYQLE HVVRTHKGAD DRAFRSVYQE EDEQRIKGLS ISRDLVEVGG HALKTNITTL GPLVLPFSEQ LLFFAGVLFR
401: HLYPSKTSTP PPPAANGDTS AAAPYIPDFK RAFEHFCMHA ASRDVLEHLQ RNLGLRDADL EASRAALHRF GNTSSSSIWY ELAYLEAKGR VRRGDRVWQL
501: AFGSGFKCNS AVWRAVRRVR RPSRSPWLDC VDQYPARMDA

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.