Factsheet for Zm00001d027904_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	98.53	98.53
Os03t0181500-01	Rice	plasma membrane	95.4	95.57
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	94.29	94.81
TraesCS4B01G297500.1	Wheat	golgi	94.29	94.81
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	94.11	94.63
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	69.43	86.07
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	71.82	80.08
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	65.19	79.37
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	61.51	74.89
KRH61616	Soybean	nucleus	71.45	72.39
KRH52284	Soybean	nucleus	71.27	72.34
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	69.8	71.51
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	69.61	71.05
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	71.09	70.18
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.9	70.13
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	70.53	70.02
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	65.19	69.96
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	70.53	69.89
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	67.4	69.71
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.17	69.65
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	69.24	69.63
Zm00001d009608_P001	Maize	plasma membrane	56.35	60.59
Zm00001d039053_P001	Maize	plasma membrane	56.72	59.92
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	53.41	56.09
Zm00001d039094_P001	Maize	cytosol	52.49	55.99
Zm00001d046444_P001	Maize	plasma membrane	51.93	54.76
Zm00001d048061_P001	Maize	golgi	49.54	54.45
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	49.36	54.25
Zm00001d045660_P001	Maize	mitochondrion	28.18	52.58
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	50.46	51.22
Zm00001d037328_P001	Maize	cytosol	34.44	50.95
Zm00001d048953_P001	Maize	mitochondrion, plastid	47.15	49.9
Zm00001d028406_P001	Maize	peroxisome	49.91	49.54
Zm00001d047931_P001	Maize	peroxisome	49.17	48.9
Zm00001d051787_P001	Maize	mitochondrion	40.52	45.36
Zm00001d017941_P001	Maize	plasma membrane	40.52	44.62
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	39.96	43.84
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	40.15	43.17
Zm00001d027766_P001	Maize	mitochondrion	40.33	41.4
Zm00001d044579_P001	Maize	golgi	36.28	39.88
Zm00001d009354_P001	Maize	endoplasmic reticulum	35.54	39.71
Zm00001d044580_P001	Maize	mitochondrion	34.99	39.01

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100283031	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	EMBL:BT061074	UniProt:C0HFG8	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629
GO:GO:0006633	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409
GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	GO:GO:0080167	InterPro:IPR016039	ProteinID:ONL94255.1	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	SUPFAM:SSF53901	TMHMM:TMhelix
InterPro:Thiolase-like	UniParc:UPI000189D5B9	EnsemblPlantsGene:Zm00001d027904	EnsemblPlants:Zm00001d027904_P001	EnsemblPlants:Zm00001d027904_T001	SEG:seg

Description

3-ketoacyl-CoA synthase

Coordinates

chr1:+:17186476..17190166

Molecular Weight (calculated)

60298.6 Da

IEP (calculated)

9.254

GRAVY (calculated)

-0.067

Length

543 amino acids

Sequence
(BLAST)

001: MAREEQALLS TEIVNRGVEP SGPDAGSPAF SVRVRRRLPD FLQSVNLKYV RLGYHYLISH GVYLATIPVI VLVCGAELGS LSRDELWRKV WGEATYDLAT
101: VLAFLAVLAF TISVYIMSRP RPVYLIDFAC YKPADELKVS KAEFIDLARK SGKFDEDSLA FQSRLLAKSG IGDESYMPRC VFEPNASCAT MKEGRAEAST
201: AMFAALDELF DKCRVRPKDV GVLVVNCSLF NPTPSLSAMI VNHYKMRGNI LSYNLGGMGC SAGVIAIDLA RDMLQASGAG LAVVVSTEAV SFTWYPGKRR
301: SMLIPNAFFR AGCAAVLLSN RRRDFHRAKY QLEHVVRTHK GADDRAFRSV YQEEDEQRIK GLSISRDLLE VGGHALKTNI TTLGPLVLPF SEQLLFFAGV
401: LFRHLFPSKA STPAPPTTPG DASAAAPYIP DFKRAFEHFC MHAASRDVLE HLQSNLGLRD ADLEASRAAL HRFGNTSSSS IWYELAYLEA KGRVRRGDRV
501: WQLAFGSGFK CNSAVWRAVR RVRRPARSPW LDCIDQYPAR MDA

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.