Factsheet for Os03t0181500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 21433289
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	96.13	95.95
Zm00001d027904_P001	Maize	plastid	95.57	95.4
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	94.28	94.63
TraesCS4B01G297500.1	Wheat	golgi	94.28	94.63
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	94.1	94.44
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	69.56	86.07
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	72.51	80.7
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	65.68	79.82
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	61.99	75.34
KRH61616	Soybean	nucleus	72.14	72.95
KRH52284	Soybean	nucleus	71.96	72.9
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	70.3	71.89
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.11	71.43
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	70.66	70.02
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	71.03	70.0
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.85	69.95
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	67.71	69.9
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	70.66	69.89
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.3	69.65
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	64.94	69.57
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	69.19	69.44
Os05t0568000-02	Rice	plasma membrane	56.09	59.14
Os11t0591200-01	Rice	mitochondrion	43.73	54.86
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	51.48	53.76
Os05t0574600-01	Rice	endoplasmic reticulum, peroxisome, plastid	51.48	53.65
Os03t0220100-01	Rice	golgi, mitochondrion	48.34	53.04
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	50.55	52.79
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	49.45	50.38
Os06t0262800-01	Rice	plasma membrane	40.96	44.94
Os10t0416200-01	Rice	cytosol, mitochondrion	41.88	43.4
Os02t0731900-01	Rice	plasma membrane	39.85	43.11
Os01t0529800-01	Rice	plasma membrane	36.72	41.63
Os06t0260500-00	Rice	mitochondrion	36.16	37.19
Os05t0574500-01	Rice	nucleus	7.01	17.19

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	EntrezGene:4331836	MapMan:5.1.6.1.1
ProteinID:ABF94315.1	InterPro:ACP_syn_III_C	EMBL:AK060840	EMBL:AK061335	EMBL:AK099232	EMBL:AK119228
ProteinID:BAF11084.1	ProteinID:BAS82626.1	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0006633
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	GO:GO:0080167	InterPro:IPR016039	EnsemblPlantsGene:Os03g0181500	EnsemblPlants:Os03t0181500-01	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	UniProt:Q10QW1	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0000DB4895	RefSeq:XP_015632380.1	SEG:seg	:

Description

ONION1Fatty acid elongase (beta-ketoacyl-CoA synthase), Shoot development (Os03t0181500-01);Similar to (Rice Genome Annotation Project) fiddlehead-like protein. (Os03t0181500-02)

Coordinates

chr3:+:4266978..4271778

Molecular Weight (calculated)

60112.5 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.061

Length

542 amino acids

Sequence
(BLAST)

001: MAREQALLLT EIVNRGVEPS GPDAGSPTFS VRVRRRLPDF LQSVNLKYVR LGYHYLISHG VYLATIPVIV LVCGAEVGSL SRDELWRKVW GEATYDLATV
101: LAFLAVLAFT ISVYIMSRPR PVYLIDFACY KPADELKVSK AEFIDLARKS GKFDEDSLAF QSRLLAKSGI GDESYMPRCV FEPGTNCATM KEGRAEASAA
201: MFAALDELFD KCRVRPKDVG VLVVNCSLFN PTPSLSAMIV NHYKMRGNIL SYNLGGMGCS AGVIAVDLAR DMLQASGAGL AVVVSTEAVS FTWYAGKRRS
301: MLIPNAFFRA GCAAVLLSNR RRDFHRAKYQ LEHIVRTHKG ADDRSFRSVY QEEDEQRIKG LSISRDLVEV GGHALKTNIT TLGPLVLPFS EQILFFAGVL
401: FRHLFPSKTS APPPPSADGD ASAAAPYIPD FKRAFEHFCM HAASRDVLEH LQGNLGLRDG DLEASRAALH RFGNTSSSSI WYELAYLEAK GRVRRGDRVW
501: QLAFGSGFKC NSAVWRAVRR VRRPARSPWL DCVEQYPARM NA

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.