Factsheet for Os05t0574500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 18022940
nucleus: 18203134
extracellular: 18372294
nucleus: 19621931
cytosol: 19685898
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19986	Sorghum	cytosol	99.09	99.09
TraesCS1D01G420600.2	Wheat	cytosol	98.19	98.19
TraesCS1B01G443100.1	Wheat	cytosol	98.19	98.19
TraesCS1A01G413000.1	Wheat	golgi	98.19	98.19
Os11t0591200-01	Rice	mitochondrion	16.74	8.56
Os05t0568000-02	Rice	plasma membrane	19.46	8.37
Os05t0574600-01	Rice	endoplasmic reticulum, peroxisome, plastid	19.0	8.08
Os03t0220100-01	Rice	golgi, mitochondrion	17.65	7.89
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	18.1	7.71
Os01t0529800-01	Rice	plasma membrane	15.84	7.32
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	17.19	7.32
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	17.19	7.14
Os06t0262800-01	Rice	plasma membrane	15.84	7.09
Os03t0181500-01	Rice	plasma membrane	17.19	7.01
Os10t0416200-01	Rice	cytosol, mitochondrion	16.29	6.88
CDY49219	Canola	endoplasmic reticulum, plasma membrane	14.03	6.84
Os02t0731900-01	Rice	plasma membrane	15.38	6.79
Os06t0260500-00	Rice	mitochondrion	15.38	6.45
CDY49218	Canola	plasma membrane	0.0	0.0

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	EntrezGene:4339683	ProteinID:AAT69585.1	EMBL:AB015287	EMBL:AB015972
EMBL:AB376668	EMBL:AK061714	EMBL:AK098889	UniProt:B5BQV2	ProteinID:BAF18304.1	ProteinID:BAS95461.1
ProteinID:EAZ35364.1	ProteinID:EEE64779.1	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EnsemblPlantsGene:Os05g0574500	EnsemblPlants:Os05t0574500-01	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF8	UniProt:Q7GD79
InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000A6CAB	RefSeq:XP_015639466.1	SEG:seg

Description

Spi-1 protein, Transforming protein (ras), Ran GTPase 2, Ras-like nuclear GTPase 2, Ras-related nuclear protein 2Similar to GTP-binding nuclear protein Ran1B (Fragment). (Os05t0574500-01)

Coordinates

chr5:-:28622492..28624739

Molecular Weight (calculated)

25040.0 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.386

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQGTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFTTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTSRLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDPNLHFV EAVALKPPEV PIDLAMQQQH
201: EAELAAAAAQ PLPDDDDDLI E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.