Factsheet for Os06t0262800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045660_P001	Maize	mitochondrion	51.01	86.6
EER89559	Sorghum	mitochondrion, plasma membrane	77.73	78.37
HORVU0Hr1G038430.1	Barley	endoplasmic reticulum, plasma membrane	72.47	77.83
TraesCS4D01G008100.1	Wheat	plasma membrane	66.6	76.87
TraesCS4A01G031500.1	Wheat	plasma membrane	74.49	76.19
TraesCS4B01G274700.1	Wheat	plastid	73.68	75.99
TraesCS4D01G273400.1	Wheat	endoplasmic reticulum	73.89	75.57
Os02t0731900-01	Rice	plasma membrane	75.3	74.25
TraesCS7D01G519400.1	Wheat	plasma membrane	69.03	71.19
TraesCS7D01G035700.1	Wheat	plasma membrane	69.84	71.13
TraesCSU01G166100.1	Wheat	plasma membrane	70.65	70.94
TraesCS4A01G303900.1	Wheat	plasma membrane	70.45	70.73
TraesCS7D01G519300.1	Wheat	golgi, plasma membrane	68.22	70.5
HORVU7Hr1G006910.1	Barley	plasma membrane	68.83	69.82
TraesCS7B01G449300.1	Wheat	plasma membrane	67.41	69.67
TraesCS7A01G532300.1	Wheat	golgi	67.41	69.52
TraesCS7A01G532200.1	Wheat	cytosol	14.37	68.27
TraesCS7B01G449000.1	Wheat	golgi	66.4	67.35
Os06t0260500-00	Rice	mitochondrion	67.0	62.81
Os01t0529800-01	Rice	plasma membrane	58.3	60.25
Os03t0220100-01	Rice	golgi, mitochondrion	59.31	59.31
KRH35956	Soybean	plasma membrane	59.31	59.07
Solyc02g085870.2.1	Tomato	plasma membrane	58.91	58.67
GSMUA_Achr3P07400_001	Banana	plasma membrane	46.15	58.61
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	58.7	58.47
KRG90814	Soybean	cytosol, golgi, plasma membrane	58.7	58.47
PGSC0003DMT400032993	Potato	plasma membrane	58.5	58.27
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	58.3	58.06
VIT_14s0006g02990.t01	Wine grape	plasma membrane	57.29	57.52
Bra004034.1-P	Field mustard	plasma membrane	56.88	57.11
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	57.29	57.06
CDY07381	Canola	plasma membrane	57.29	56.94
CDY04232	Canola	plasma membrane	57.09	56.74
PGSC0003DMT400037757	Potato	plastid	52.83	56.62
Bra024749.1-P	Field mustard	plasma membrane	56.88	56.54
CDY42109	Canola	plasma membrane	56.88	56.54
AT1G25450.1	Thale cress	plasma membrane	56.28	56.5
Solyc02g063140.2.1	Tomato	golgi	56.68	56.45
AT1G68530.1	Thale cress	plasma membrane	56.48	56.14
PGSC0003DMT400037714	Potato	plasma membrane	55.06	55.06
GSMUA_Achr5P05870_001	Banana	plasma membrane	46.36	54.52
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	54.45	54.45
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	53.04	53.25
Os11t0591200-01	Rice	mitochondrion	44.94	51.39
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	52.63	50.1
Os05t0568000-02	Rice	plasma membrane	51.21	49.22
Os05t0574600-01	Rice	endoplasmic reticulum, peroxisome, plastid	50.0	47.5
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	49.19	46.82
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	48.38	46.05
Os10t0416200-01	Rice	cytosol, mitochondrion	45.75	43.21
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	45.75	42.48
Os03t0181500-01	Rice	plasma membrane	44.94	40.96
Os05t0574500-01	Rice	nucleus	7.09	15.84

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	EntrezGene:4340694	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	ProteinID:BAD54084.1	ProteinID:BAD54346.1	ProteinID:BAF19244.1	ProteinID:BAS97128.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EnsemblPlantsGene:Os06g0262800	EnsemblPlants:Os06t0262800-01	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF18	UniProt:Q5Z6S3	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0000446F2F	RefSeq:XP_015641789.1	SEG:seg	:

Description

Similar to Very-long-chain fatty acid condensing enzyme CUT1. (Os06t0262800-01)

Coordinates

chr6:-:8598245..8599912

Molecular Weight (calculated)

54252.9 Da

IEP (calculated)

8.474

GRAVY (calculated)

0.148

Length

494 amino acids

Sequence
(BLAST)

001: MSMAARFLDS LKATYQYYHR AMGNVLVAVP AAAGALVTVA LLAPEAESTT VAIGRLRELI RPAHLFLAVF LPAAAATVYL VMRPRAVYLV DYACFRTAPN
101: CRVPFATFLE HARQVPTLTE RSVRFMTRLL ERSGLGEETC LPPAHHYIPT YKYCTLEAAR AEVDLVVFSA VDELFAKTGV SPDDVDILVV NCSLFCPTPS
201: FVDMIVNRYK LRSDIRSMHL SGMGCSASLI SIGLARNLLQ VAPHGARALV VSTETITPNY YVGNERAMLL PNCLFRMGGA AALLSTSPAK ARFRLKHVVR
301: TLTGAEDSAH HCVFQEEDEH GSIGINLSKD LMTIAGNALK ANITAIAPLV LPASEQLKFA LAFIARKALS GRVKPYIPDF RAAFEHFCIH AGGRAVIDEL
401: QRSLCLSDEQ VQASRMALHR FGNTSSSSVW YELAYVEAKG RMRRGDRVWM IGFGSGFKCN SAAWECISPA RDDDGPWATS IHRYPVDIPD VLKH

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.