Factsheet for TraesCSU01G166100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G303900.1	Wheat	plasma membrane	97.97	97.97
TraesCS7D01G519400.1	Wheat	plasma membrane	80.49	82.67
TraesCS7D01G519300.1	Wheat	golgi, plasma membrane	80.28	82.64
Zm00001d045660_P001	Maize	mitochondrion	47.97	81.1
TraesCS7B01G449300.1	Wheat	plasma membrane	78.05	80.33
TraesCS7B01G449000.1	Wheat	golgi	78.05	78.85
Os06t0262800-01	Rice	plasma membrane	70.94	70.65
EER89559	Sorghum	mitochondrion, plasma membrane	70.12	70.41
VIT_14s0006g02990.t01	Wine grape	plasma membrane	57.93	57.93
KRH35956	Soybean	plasma membrane	57.93	57.46
KRG90814	Soybean	cytosol, golgi, plasma membrane	57.52	57.06
PGSC0003DMT400037757	Potato	plastid	53.46	57.05
Solyc02g085870.2.1	Tomato	plasma membrane	57.11	56.65
PGSC0003DMT400032993	Potato	plasma membrane	56.91	56.45
CDY04232	Canola	plasma membrane	56.91	56.34
Bra004034.1-P	Field mustard	plasma membrane	56.3	56.3
CDY07381	Canola	plasma membrane	56.71	56.14
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	56.3	55.85
CDY42109	Canola	plasma membrane	56.3	55.73
Bra024749.1-P	Field mustard	plasma membrane	56.3	55.73
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	56.1	55.65
AT1G25450.1	Thale cress	plasma membrane	55.49	55.49
AT1G68530.1	Thale cress	plasma membrane	55.89	55.33
PGSC0003DMT400037714	Potato	plasma membrane	55.49	55.26
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	55.08	54.86
Solyc02g063140.2.1	Tomato	golgi	55.28	54.84
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	55.08	54.64
GSMUA_Achr3P07400_001	Banana	plasma membrane	43.09	54.5
GSMUA_Achr5P05870_001	Banana	plasma membrane	45.12	52.86
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	52.85	52.85
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	53.46	50.67

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF18	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	EnsemblPlantsGene:TraesCSU01G166100	EnsemblPlants:TraesCSU01G166100.1
TIGR:cd00831	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:241848525..241850003

Molecular Weight (calculated)

54276.9 Da

IEP (calculated)

8.790

GRAVY (calculated)

0.137

Length

492 amino acids

Sequence
(BLAST)

001: MSSSCAAMHP KAVYRLIVDN FLALVTAAMA TLSVVALVWL GPEELISWLR GREFQPAHLF LAGFVAAVAA TLYLLLRPRA VYLVDYACFS SSFNRPLARI
101: PMASFIEHNK HTPSINDRSV RFISRLLERS GLGEETCLPA AHNYVPTHKY CTLDNARAEF ELVVFSAIDD LLAKTGVTPD AISVLVLNCS LFCPTPSLVD
201: VIIKRYNLRS DVRSINLSGM GCSAGLISVG LARNLLQVLP RGSRALVVST ETITPNYYVG NERAMLLPNC LFRVGGVAAL LSTSPAKARF RLKHVVRTFT
301: GADDSAYRCV YQEEDEQGNI GINLSKNLMA IAGNSLEANI TRIGPLVLPA SEQLLFALSF VARKVLRVRV KPYIPDFSTA FKHLCIHAGG RAVIDELQKN
401: LSLSDEQVEA SRMTLHRFGN TSSSSLWYEL AYVEAKGRMR KGDRIWMIGF GSGFKCNSAV WECIDPPARN TDGPWSTCIH RYPVDIPDVR NN

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.