CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027904_P001	Maize	plastid	98.53	98.53
Os03t0181500-01	Rice	plasma membrane	95.95	96.13
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	94.66	95.19
TraesCS4B01G297500.1	Wheat	golgi	94.66	95.19
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	94.48	95.0
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	69.8	86.53
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	72.01	80.29
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	65.19	79.37
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	61.88	75.34
KRH61616	Soybean	nucleus	71.45	72.39
KRH52284	Soybean	nucleus	71.27	72.34
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	70.17	71.89
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	69.61	71.05
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	71.27	70.36
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	65.56	70.36
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	70.72	70.2
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	69.8	70.19
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.9	70.13
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	70.72	70.07
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.35	69.84
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	67.4	69.71
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	56.17	58.65
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	52.67	55.75
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	53.59	55.53
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	51.93	54.65
EER92628	Sorghum	plasma membrane	49.54	54.45
EER91722	Sorghum	peroxisome	50.09	50.84
KXG39781	Sorghum	peroxisome	48.99	48.45
KXG28804	Sorghum	plastid	45.49	47.32
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	44.38	45.3
KXG19727	Sorghum	mitochondrion, plastid	40.15	44.22
KXG30818	Sorghum	golgi, mitochondrion	39.59	44.15
EER89559	Sorghum	mitochondrion, plasma membrane	38.67	42.86
EER95458	Sorghum	mitochondrion	40.88	41.97
EER91618	Sorghum	plastid	40.33	41.79
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	36.1	40.66
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	35.54	40.12
EER89567	Sorghum	endoplasmic reticulum, golgi, plastid	33.52	39.91
OQU76197	Sorghum	golgi	34.99	39.67
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	35.54	39.39
EES00849	Sorghum	endoplasmic reticulum, golgi	34.81	38.26
EES19986	Sorghum	cytosol	6.81	16.74

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:8057674
InterPro:ACP_syn_III_C	UniProt:C5WVS4	EnsemblPlants:EER95395	ProteinID:EER95395	ProteinID:EER95395.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0080167	InterPro:IPR016039
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	MetaCyc:PWY-4381
MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433	MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601
MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724	MetaCyc:PWY-7725	EnsemblPlantsGene:SORBI_3001G482300	SUPFAM:SSF53901
unigene:Sbi.14375	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0001A82E8F	RefSeq:XP_002468397.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:75398361..75402377

Molecular Weight (calculated)

60400.8 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.091

Length

543 amino acids

Sequence
(BLAST)

001: MAREEQALLS TEIMNRGVEP SGPDAGSPTF SVRVRRRLPD FLQSVNLKYV RLGYHYLISH GVYLATIPVI VLVCGAEVGS LSRDELWRKV WGEATYDLAT
101: VLAFLAVLAF TISVYIMSRP RPVYLIDFAC YKPADELKVS KAEFIDLARK SGKFDEDSLA FQSRLLAKSG IGDESYMPRC VFEPNANCAT MKEGRAEAST
201: AMFAALDELF DKCRVRPKDV GVLVVNCSLF NPTPSLSAMI VNHYKMRGNI LSYNLGGMGC SAGVIAIDLA RDMLQASGAG LAVVVSTEAV SFTWYPGKRR
301: SMLIPNAFFR AGCAAVLLSN RRRDFHRAKY QLEHVVRTHK GADDRAFRSV YQEEDEQRIK GLSISRDLLE VGGHALKTNI TTLGPLVLPF SEQLLFFAGV
401: LFRHLFPSKA STPPPPTTPG DASAAAPYIP DFKRAFEHFC MHAASRDVLE HLQSNLGLRN SDLEASRAAL HRFGNTSSSS IWYELAYLEA KGRVRRGDRV
501: WQLAFGSGFK CNSAVWRAVR RVRRPARSPW LDCVDQYPAR MDA

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.