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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • endoplasmic reticulum 2
  • cytosol 1
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol
Predotar:plastid
PProwler:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d032948_P001 Maize endoplasmic reticulum, golgi, plasma membrane 88.17 93.33
Zm00001d014168_P001 Maize peroxisome, plasma membrane, plastid 87.4 90.69
Os10t0416200-01 Rice cytosol, mitochondrion 76.34 76.48
TraesCS6B01G473900.1 Wheat mitochondrion 71.95 74.8
TraesCS6A01G415500.2 Wheat mitochondrion 71.95 74.65
EER95458 Sorghum mitochondrion 65.65 65.03
GSMUA_Achr6P23320_001 Banana endoplasmic reticulum, golgi, vacuole 43.13 56.64
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 53.44 54.58
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 51.91 52.71
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 51.91 51.91
KXG28804 Sorghum plastid 50.95 51.15
EER92628 Sorghum plasma membrane 46.76 49.6
EES08876 Sorghum cytosol, endoplasmic reticulum, plasma membrane 49.62 48.87
EES19964 Sorghum endoplasmic reticulum, plasma membrane, plastid 48.09 48.46
EER91722 Sorghum peroxisome 48.66 47.66
KXG30818 Sorghum golgi, mitochondrion 42.56 45.79
KXG19727 Sorghum mitochondrion, plastid 42.75 45.44
EER89559 Sorghum mitochondrion, plasma membrane 42.18 45.1
EER89567 Sorghum endoplasmic reticulum, golgi, plastid 39.12 44.96
KXG39781 Sorghum peroxisome 46.37 44.26
KXG19733 Sorghum endoplasmic reticulum, plasma membrane, vacuole 39.5 43.04
EES00849 Sorghum endoplasmic reticulum, golgi 39.5 41.9
EES03073 Sorghum endoplasmic reticulum, golgi, plasma membrane 38.93 41.63
OQU76197 Sorghum golgi 37.6 41.13
EER95395 Sorghum cytosol, peroxisome, plasma membrane 41.79 40.33
EER88189 Sorghum endoplasmic reticulum, plasma membrane, vacuole 36.64 39.83
EES19986 Sorghum cytosol 7.06 16.74
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1EntrezGene:8064914
InterPro:ACP_syn_III_CUniProt:C5X1L0EnsemblPlants:EER91618ProteinID:EER91618ProteinID:EER91618.1InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740
GO:GO:0016746GO:GO:0016747InterPro:IPR016039PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417
PANTHER:PTHR31561PANTHER:PTHR31561:SF16MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433
MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724
MetaCyc:PWY-7725EnsemblPlantsGene:SORBI_3001G247700SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-likeUniParc:UPI0001A82043
RefSeq:XP_002464620.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:26479602..26484784
Molecular Weight (calculated)
56970.1 Da
IEP (calculated)
9.219
GRAVY (calculated)
0.101
Length
524 amino acids
Sequence
(BLAST)
001: MGSREVLGAA APTTTTTTTT QANKVAVMSR RVVIQLLVLL AVVVFLAPPL SSKMPGSSLL KEMENLVGLS PAAVAVACWA AAAAAWAYAV SRPRPVYLVD
101: LSGYVAGAAH EASRAKTIAH FGRCGRFSDE SMAFQKRMLE RSGLGERTHF PASLISVPVD MCLRTAREES HAVIFGVVDD LLRRAAVAPA EVGVLIFNSS
201: LLSPTPSFTS LIVNRYGMRH DVVSHNLSGM GCSAGIIAID LAKRLLQVHR DTYALVVSTE NITLNAYMGN NRPMLVTNTL FRVGGAAILL SNRGADRRRA
301: KYQLIHTVRT HRGAHDQSFG CVTQEEDDVG CVGVSLSKEL MVVAGEALRT NITTLGPLVL PMSEQLRFLA TVVLNRVFRA NVRAYLPDFK LAFDHFCIHA
401: GGRGVLDELE RSLKLSAWHM EPSRMTLCRF GNTSSSSLWY ELAYCEAKGR IRKGDRVWQI AFGSGFKCNS AVWKALRTVD GGEEGNPWTP EMDVLPIHVP
501: KVSPIDETTY TFPDGATYKV SSLG
Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)
001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR
Arabidopsis Description
KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.