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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 2
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01120.1 OQU92006 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d030343_P001 Maize cytosol, peroxisome, plasma membrane 93.83 93.83
KXG39781 Sorghum peroxisome 78.13 76.14
GSMUA_Achr1P02540_001 Banana cytosol 59.44 75.0
CDY15199 Canola cytosol 44.3 69.71
KRH68953 Soybean cytosol, golgi, nucleus 61.68 62.26
VIT_15s0048g02720.t01 Wine grape cytosol, peroxisome, plasma membrane 61.68 62.26
Solyc10g009240.2.1 Tomato peroxisome 60.37 61.06
AT1G01120.1 Thale cress plasma membrane 60.19 60.98
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 59.25 60.5
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 57.94 60.43
Bra032621.1-P Field mustard plasma membrane 55.33 60.29
PGSC0003DMT400028047 Potato plasma membrane 59.81 59.81
CDY32443 Canola plasma membrane 52.9 59.2
CDY37475 Canola plasma membrane 52.71 59.0
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 56.07 58.14
CDX90012 Canola cytosol 57.38 58.03
EES19964 Sorghum endoplasmic reticulum, plasma membrane, plastid 54.95 56.54
EER92628 Sorghum plasma membrane 50.84 55.06
AT2G46720.1 Thale cress endoplasmic reticulum, plasma membrane 47.66 54.72
AT3G10280.1 Thale cress endoplasmic reticulum, plasma membrane 46.73 54.47
KXG28804 Sorghum plastid 51.59 52.87
EER95458 Sorghum mitochondrion 50.28 50.85
KXG30818 Sorghum golgi, mitochondrion 45.61 50.1
EER95395 Sorghum cytosol, peroxisome, plasma membrane 50.84 50.09
EER89559 Sorghum mitochondrion, plasma membrane 45.79 50.0
EES08876 Sorghum cytosol, endoplasmic reticulum, plasma membrane 49.53 49.81
KXG19727 Sorghum mitochondrion, plastid 45.79 49.7
EER91618 Sorghum plastid 47.66 48.66
EER89567 Sorghum endoplasmic reticulum, golgi, plastid 39.63 46.49
KXG19733 Sorghum endoplasmic reticulum, plasma membrane, vacuole 41.5 46.15
OQU76197 Sorghum golgi 40.56 45.3
EER88189 Sorghum endoplasmic reticulum, plasma membrane, vacuole 39.81 44.19
EES00849 Sorghum endoplasmic reticulum, golgi 40.19 43.52
EES03073 Sorghum endoplasmic reticulum, golgi, plasma membrane 39.81 43.47
CDY41551 Canola golgi 48.6 41.34
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 48.22 40.5
EES19986 Sorghum cytosol 7.1 17.19
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1EntrezGene:8083832
InterPro:ACP_syn_III_CUniProt:C5WNZ0EnsemblPlants:EER91722ProteinID:EER91722ProteinID:EER91722.1InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740
GO:GO:0016746GO:GO:0016747InterPro:IPR016039PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417
PANTHER:PTHR31561PANTHER:PTHR31561:SF67MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433
MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724
MetaCyc:PWY-7725EnsemblPlantsGene:SORBI_3001G264500SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-likeUniParc:UPI0001A821B3
RefSeq:XP_002464724.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:49414202..49415809
Molecular Weight (calculated)
59060.6 Da
IEP (calculated)
9.658
GRAVY (calculated)
-0.010
Length
535 amino acids
Sequence
(BLAST)
001: MESAPSTAAV MERERLTAEL DLAVVAAEPS SFVVKIRRRL PDFARSVNLK YVRLGLRSGG IPAPSTWVPL ALAPPLLAAA VYSLVGADKL YSLDLLTCVA
101: WLAAAVLLLT VYFLKRPRPV YLVDFACYRP ADEHAISKEG FLDMTESTGW FNAEALEFQT KITRRSGLGD RTYLPPGIQA RPPRLSLTEA RAEAEAVMFG
201: CLDALFAATG IDPRRDVRVL IVNCSLFNPT PSLASMVVHR YKMREDVKSF NLAGMGCSAG LIAVDLARDM LQANPRCYAV VVSTENITLN WYFGNDRSML
301: LSNCIFRMGG AAALLSNRRA DARRAKYRLL HTVRTHKGAA DECYSCVYQR EDGAGSVGVS LARELMAVAG DALKTNITTL GPLVLPLSEQ LKFLKSLVLR
401: RVLRSRGVRP YIPDFRRAFE HFCVHAGGRA VLEEVQRSLG LRDVDMEPSR CTLHRFGNTS SSSLWYELAY AEAKGRVRRG HRVWQIGFGS GFKCNSAVWR
501: ALRDVPPVHA DGAGGGSNCN PWVDSIHRYP PKAYI
Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.