CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01120.1	CDY03088	AT2G01950.1	19000166
AT1G01120.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89699	Canola	cytosol	62.06	64.92
CDX90012	Canola	cytosol	99.71	64.08
CDX94721	Canola	cytosol	73.53	63.13
CDY37475	Canola	plasma membrane	87.06	61.92
CDY32443	Canola	plasma membrane	87.06	61.92
AT1G01120.1	Thale cress	plasma membrane	94.71	60.98
CDY63070	Canola	cytosol	64.71	59.78
CDY10355	Canola	cytosol	45.29	59.69
CDY47458	Canola	cytosol	8.24	56.0
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	74.12	47.91
CDX89834	Canola	plasma membrane	73.24	47.79
CDX70186	Canola	plastid	72.06	47.76
CDX76286	Canola	golgi	66.47	47.68
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	73.82	47.63
CDX98800	Canola	plastid	72.06	47.3
CDY46243	Canola	golgi	65.88	47.26
CDY18212	Canola	plasma membrane	73.24	47.07
CDY47457	Canola	cytosol, endoplasmic reticulum, plasma membrane	52.94	46.27
CDY04232	Canola	plasma membrane	67.06	45.88
CDY07381	Canola	plasma membrane	66.76	45.67
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	71.18	45.49
CDY42109	Canola	plasma membrane	65.59	44.87
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	70.29	44.67
CDY46211	Canola	cytosol, peroxisome, plasma membrane	66.18	44.38
CDX71278	Canola	cytosol, peroxisome, plasma membrane	66.18	44.38
GSMUA_Achr1P02540_001	Banana	cytosol	55.29	44.34
EER91722	Sorghum	peroxisome	69.71	44.3
CDY29431	Canola	plasma membrane	62.94	44.21
TraesCS4A01G068400.1	Wheat	peroxisome	70.29	44.18
TraesCS4D01G226100.1	Wheat	peroxisome	70.0	44.16
HORVU4Hr1G063420.1	Barley	peroxisome	70.59	44.04
CDX71202	Canola	endoplasmic reticulum, golgi, plasma membrane	61.76	44.03
CDX69040	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	60.0	43.97
TraesCS4B01G225500.1	Wheat	peroxisome	70.59	43.96
CDY21665	Canola	plasma membrane	65.88	43.92
Zm00001d028406_P001	Maize	peroxisome	70.59	43.88
CDX75415	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	59.71	43.75
CDX81929	Canola	plasma membrane	65.59	43.73
Zm00001d047931_P001	Maize	peroxisome	69.71	43.41
KXG39781	Sorghum	peroxisome	70.0	43.35
CDY26665	Canola	cytosol, peroxisome, plasma membrane	61.76	42.42
CDX89700	Canola	endoplasmic reticulum, golgi, plasma membrane	53.24	42.0
CDY17465	Canola	plasma membrane	57.65	41.26
CDY37951	Canola	endoplasmic reticulum, plasma membrane	54.41	41.2
CDX68323	Canola	endoplasmic reticulum, golgi	54.41	41.02
CDY66107	Canola	endoplasmic reticulum, plasma membrane, plastid	53.82	40.76
CDY02266	Canola	endoplasmic reticulum, golgi, plasma membrane	52.94	40.45
CDY49290	Canola	endoplasmic reticulum, golgi	50.29	40.43
CDX72475	Canola	endoplasmic reticulum, golgi	50.29	40.43
CDY49219	Canola	endoplasmic reticulum, plasma membrane	53.82	40.4
CDX76287	Canola	endoplasmic reticulum, golgi, plasma membrane	59.71	40.12
CDY33931	Canola	plastid	53.53	39.82
CDY26762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	54.71	39.41
CDY05644	Canola	plasma membrane, plastid, vacuole	52.94	39.39
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	60.29	38.53
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	61.18	37.96
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	61.18	37.89
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	60.88	37.84
CDY41551	Canola	golgi	69.12	37.36
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	69.12	36.89
CDY49218	Canola	plasma membrane	0.0	0.0

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	KEGG:00650+2.3.1.19	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
GO:A0A078FQQ1	UniProt:A0A078FQQ1	InterPro:ACP_syn_III_C	EnsemblPlants:CDY15199	ProteinID:CDY15199	ProteinID:CDY15199.1
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00085385001	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PANTHER:PTHR31561
PANTHER:PTHR31561:SF65	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433	MetaCyc:PWY-6598
MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724	MetaCyc:PWY-7725
SUPFAM:SSF53901	InterPro:Thiolase-like	UniPathway:UPA00094	UniParc:UPI0004EEDB88	SEG:seg	:

Description

BnaC05g00780DBnaC05g00780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQQ1]

Coordinates

chrLK032052:+:405633..406896

Molecular Weight (calculated)

37838.9 Da

IEP (calculated)

9.014

GRAVY (calculated)

-0.117

Length

340 amino acids

Sequence
(BLAST)

001: MSEARAEAEA VMFGALDSLF EKTGIKPAEI GILIVNCSLF SPTPSLSAMI VNRYKMRQDI KSYNLGGMGC SAGLISIELA NNLLKANPNS CAVVVSTENI
101: TLNWYFGNDR SMLLCNCIFR MGGAAILLSN RRQDRSKSKY ELVNVVRTHK GSDDKNYNCV YQKEDERGTI GVSLSKELMS VAGDALKTNI TTLGPMVLPL
201: SEQLMFLISL VKRKLFKLKV KPYIPDFKLA FEHFCIHAGG RAVLDEVQKN LDLKDWHMEP SRMTLHRFGN TSSSSLWYEM AYTEAKGRVK TGDRLWQIAF
301: GSGFKCNSAV WKALRAVSTE ELTGNAWAGS VEDYPVKIVQ

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.