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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01120.1 CDY03088 AT2G01950.1 19000166
AT1G01120.1 CDY17621 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32443 Canola plasma membrane 98.74 98.74
CDY15199 Canola cytosol 61.92 87.06
AT1G01120.1 Thale cress plasma membrane 93.31 84.47
CDX90012 Canola cytosol 92.26 83.36
CDX94721 Canola cytosol 50.84 61.36
CDY63070 Canola cytosol 45.82 59.51
GSMUA_Achr1P02540_001 Banana cytosol 52.3 58.96
CDY47458 Canola cytosol 6.07 58.0
CDX89699 Canola cytosol 39.12 57.54
CDY10355 Canola cytosol 29.92 55.43
Os03t0245700-02 Rice cytosol, peroxisome, plastid 60.04 53.95
Zm00001d030343_P001 Maize cytosol, peroxisome, plasma membrane 59.2 52.9
CDX70186 Canola plastid 56.69 52.83
EER91722 Sorghum peroxisome 59.0 52.71
CDX98800 Canola plastid 56.69 52.32
TraesCS4A01G068400.1 Wheat peroxisome 59.0 52.13
TraesCS4D01G226100.1 Wheat peroxisome 58.58 51.95
HORVU4Hr1G063420.1 Barley peroxisome 59.2 51.93
Zm00001d028406_P001 Maize peroxisome 59.41 51.92
TraesCS4B01G225500.1 Wheat peroxisome 59.0 51.65
CDY14892 Canola endoplasmic reticulum, golgi, plastid 56.49 51.33
KXG39781 Sorghum peroxisome 58.79 51.18
CDX89834 Canola plasma membrane 55.65 51.06
CDX96912 Canola endoplasmic reticulum, golgi, plastid 56.28 51.04
Zm00001d047931_P001 Maize peroxisome 58.16 50.92
CDY18212 Canola plasma membrane 56.07 50.66
CDX76286 Canola golgi 49.79 50.21
CDY46243 Canola golgi 49.37 49.79
CDY29431 Canola plasma membrane 50.0 49.38
CDY47457 Canola cytosol, endoplasmic reticulum, plasma membrane 40.17 49.36
CDY21665 Canola plasma membrane 52.3 49.02
CDX81929 Canola plasma membrane 51.88 48.63
CDY46211 Canola cytosol, peroxisome, plasma membrane 51.46 48.52
CDX89700 Canola endoplasmic reticulum, golgi, plasma membrane 43.51 48.26
CDY04232 Canola plasma membrane 50.0 48.09
CDX71202 Canola endoplasmic reticulum, golgi, plasma membrane 47.91 48.01
CDX71278 Canola cytosol, peroxisome, plasma membrane 50.84 47.93
CDY07381 Canola plasma membrane 49.79 47.89
CDY26665 Canola cytosol, peroxisome, plasma membrane 49.58 47.88
CDY02266 Canola endoplasmic reticulum, golgi, plasma membrane 44.56 47.87
CDY42109 Canola plasma membrane 48.74 46.88
CDX69040 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 45.4 46.77
CDX75415 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 44.98 46.34
CDY17465 Canola plasma membrane 46.03 46.32
CDY49290 Canola endoplasmic reticulum, golgi 39.75 44.92
CDX76287 Canola endoplasmic reticulum, golgi, plasma membrane 47.49 44.86
CDX72475 Canola endoplasmic reticulum, golgi 39.54 44.68
CDX77038 Canola cytosol, endoplasmic reticulum, plasma membrane 48.95 43.98
CDY11498 Canola endoplasmic reticulum, peroxisome, plasma membrane 50.0 43.61
CDY35309 Canola cytosol, endoplasmic reticulum, plasma membrane 49.58 43.17
CDY37951 Canola endoplasmic reticulum, plasma membrane 40.38 42.98
CDX76724 Canola cytosol, endoplasmic reticulum, plasma membrane 49.16 42.96
CDX68323 Canola endoplasmic reticulum, golgi 40.17 42.57
CDY66107 Canola endoplasmic reticulum, plasma membrane, plastid 39.96 42.54
CDY26762 Canola endoplasmic reticulum, peroxisome, plasma membrane 41.84 42.37
CDY49219 Canola endoplasmic reticulum, plasma membrane 39.96 42.16
CDY33931 Canola plastid 39.54 41.36
CDY05644 Canola plasma membrane, plastid, vacuole 39.33 41.14
CDY41551 Canola golgi 53.97 41.02
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 54.39 40.82
CDY49218 Canola plasma membrane 0.42 0.7
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:00650+2.3.1.19InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1
GO:A0A078HGL6UniProt:A0A078HGL6InterPro:ACP_syn_III_CEnsemblPlants:CDY37475ProteinID:CDY37475ProteinID:CDY37475.1
InterPro:FAE1_typ3_polyketide_synthGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016740GO:GO:0016746GO:GO:0016747EnsemblPlantsGene:GSBRNA2T00064062001InterPro:IPR016039PFAM:PF08392
PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561PANTHER:PTHR31561:SF65MetaCyc:PWY-4381MetaCyc:PWY-5080
MetaCyc:PWY-5972MetaCyc:PWY-6433MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602
MetaCyc:PWY-7619MetaCyc:PWY-7724MetaCyc:PWY-7725SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-like
UniPathway:UPA00094UniParc:UPI0004EF38DDSEG:seg:::
Description
BnaC08g46130D3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A078HGL6]
Coordinates
chrLK032400:-:344671..346518
Molecular Weight (calculated)
53550.7 Da
IEP (calculated)
7.929
GRAVY (calculated)
-0.109
Length
478 amino acids
Sequence
(BLAST)
001: MERTNSIEMD QERLTAEMAF KDSSSALGLH NSFNFTTFLF LLIILPLTGT VLVQLTGLTF ETFSELWYNH AVQLDGVTRL ACLVSLCFVL IIYVTNRSKP
101: VYLVDFSCYK PEDERKMSVD SFLKMTEQNG AFTDDTVQFQ QRISNRAGLG DETYFPRGIT STPPKLNMSE ARAEAEAVMF GALDSLFEKT GIKPAEVGIL
201: IVNCSLFNPT PSLSAMIVNH YKMREDIKSY NLGGMGCSAG LISIDLANNL LKANPNSYAV VVSTENITLN WYFGNDRSML LCNCIFRMGG AAILLSNRRQ
301: DRSKSKYELV NVVRTHKGSD DKNYNCVYQK EDERGTIGVS LARELMSVAG DALKTNITTL GPMVLPLSEQ LMFLVSLVKR KLLKLKKNLD LKDWHMEPSR
401: MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK ALRVVSTEEM TGNAWAGSIE DYPVKITQ
Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.