Factsheet for HORVU4Hr1G063420.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01120.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G226100.1	Wheat	peroxisome	96.7	97.77
TraesCS4B01G225500.1	Wheat	peroxisome	97.61	97.44
TraesCS4A01G068400.1	Wheat	peroxisome	95.96	96.67
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	88.26	90.41
Zm00001d028406_P001	Maize	peroxisome	87.34	87.02
KXG39781	Sorghum	peroxisome	86.79	86.16
Zm00001d047931_P001	Maize	peroxisome	85.32	85.16
GSMUA_Achr1P02540_001	Banana	cytosol	58.53	75.24
CDY15199	Canola	cytosol	44.04	70.59
Solyc10g009240.2.1	Tomato	peroxisome	60.92	62.76
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	60.92	62.64
PGSC0003DMT400028047	Potato	plasma membrane	60.55	61.68
AT1G01120.1	Thale cress	plasma membrane	59.63	61.55
KRH68953	Soybean	cytosol, golgi, nucleus	59.45	61.13
Bra032621.1-P	Field mustard	plasma membrane	54.68	60.69
CDY37475	Canola	plasma membrane	51.93	59.2
CDY32443	Canola	plasma membrane	51.93	59.2
CDX90012	Canola	cytosol	57.25	58.98
HORVU1Hr1G090730.1	Barley	peroxisome, plasma membrane, plastid	54.5	57.34
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	46.61	54.51
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	45.5	54.03
HORVU4Hr1G067340.2	Barley	golgi	49.54	53.89
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	53.39	50.43
HORVU7Hr1G084610.6	Barley	cytosol, mitochondrion, plastid	55.05	50.0
HORVU1Hr1G089710.3	Barley	plastid	53.58	49.58
HORVU4Hr1G073840.2	Barley	golgi	45.69	48.92
HORVU0Hr1G038430.1	Barley	endoplasmic reticulum, plasma membrane	40.37	47.83
HORVU7Hr1G023540.1	Barley	mitochondrion	24.95	47.72
HORVU6Hr1G073300.1	Barley	golgi, plasma membrane	41.47	46.69
HORVU7Hr1G023280.1	Barley	plasma membrane	37.61	45.35
HORVU7Hr1G023530.2	Barley	endoplasmic reticulum, extracellular	40.18	45.15
HORVU1Hr1G086760.1	Barley	cytosol	41.47	44.75
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	35.41	44.06
HORVU2Hr1G112840.1	Barley	endoplasmic reticulum, golgi	37.8	44.02
HORVU7Hr1G006910.1	Barley	plasma membrane	39.27	43.94
HORVU3Hr1G097570.1	Barley	golgi	38.53	42.94
HORVU7Hr1G042050.1	Barley	golgi	38.35	42.92
HORVU6Hr1G094160.2	Barley	endoplasmic reticulum, golgi, plasma membrane	37.98	42.24
HORVU6Hr1G082270.1	Barley	golgi	39.63	42.19
HORVU7Hr1G042040.1	Barley	golgi	38.17	41.94
HORVU6Hr1G004830.1	Barley	golgi	37.98	41.73
HORVU7Hr1G022720.1	Barley	plasma membrane	27.34	41.5
CDY41551	Canola	golgi	47.34	41.02
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	47.34	40.5
HORVU7Hr1G030880.1	Barley	plasma membrane	36.51	39.88
HORVU7Hr1G022780.1	Barley	golgi, mitochondrion	34.68	39.87
HORVU5Hr1G087530.1	Barley	plasma membrane	34.68	38.89
HORVU3Hr1G069880.2	Barley	mitochondrion, plastid	37.8	38.43
HORVU7Hr1G022580.1	Barley	golgi, mitochondrion	25.5	38.08
HORVU5Hr1G122360.1	Barley	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	33.95	37.45

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
EMBL:AK354550	EMBL:AK361076	UniProt:F2CSE8	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:HORVU4Hr1G063420	EnsemblPlants:HORVU4Hr1G063420.1	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF67	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000200477A
SEG:seg	:	:	:	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F2CSE8]

Coordinates

chrchr4H:+:531211600..531214578

Molecular Weight (calculated)

60278.2 Da

IEP (calculated)

9.194

GRAVY (calculated)

-0.044

Length

545 amino acids

Sequence
(BLAST)

001: MESAPAAAFM ERERLTAEVT FSGDAQAAAS TEGLPSIIIK IRRRLPDFAR SVNLKYVKLG IRHGGSLTSY LPMLCVPVLA AAAYSFVRLD VIYLSIDLLS
101: CVAWLGTAML LLTVYYMKRP RPVYLVEFAC YKPEDQNKIS KEAFLDMTES TGCFNDETLA FQTKITTRSA LGDETYLPSG VQARPPRLNM AEARLEAEAV
201: MFGCLDALFA STGIDPRRDV RILIVNCSLF NPTPSLASMI IHHYKMREDV KSFNLGGMGC SAGLIAIDLA KDMLQANPNS YAVVLSTENI TLNWYFGNDR
301: SMLLSNCIFR MGGAAALLSN RRADAGRAKY RLLHTVRTHK GATDECFNCV YQREDDVGKV GVSLARELMT VAGDALKTNI TTLGPLVLPL SEQLKFLKSL
401: MMRRVFRAKG VRPYIPNFRR AFEHFCVHAG GRAVLEEVQR SLSLEDKDME PSRCALHRFG NTSSSSLWYE LAYAEAKGRV KRGNRVWQIG FGSGFKCNSA
501: VWRALRDVPP VSPPHAGAAA PGPEKKAACN PWVDCVAKYP PKAYV

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.