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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:mitochondrion
TargetP:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G279300.1 Wheat endoplasmic reticulum, golgi, plasma membrane 83.58 91.99
TraesCS3A01G279400.1 Wheat plasma membrane 83.21 91.21
TraesCS3B01G313800.1 Wheat endoplasmic reticulum, golgi, plasma membrane 83.4 88.34
Os01t0529800-01 Rice plasma membrane 71.64 80.33
EES03073 Sorghum endoplasmic reticulum, golgi, plasma membrane 72.2 78.98
Zm00001d009354_P001 Maize endoplasmic reticulum 70.9 78.19
HORVU5Hr1G087530.1 Barley plasma membrane 60.45 66.67
HORVU5Hr1G122360.1 Barley endoplasmic reticulum, mitochondrion, plasma membrane, plastid 60.45 65.59
HORVU6Hr1G073300.1 Barley golgi, plasma membrane 53.17 58.88
HORVU1Hr1G086760.1 Barley cytosol 54.1 57.43
HORVU0Hr1G038430.1 Barley endoplasmic reticulum, plasma membrane 49.07 57.17
HORVU7Hr1G006910.1 Barley plasma membrane 50.37 55.44
HORVU7Hr1G023540.1 Barley mitochondrion 29.48 55.44
HORVU3Hr1G097570.1 Barley golgi 50.0 54.81
HORVU7Hr1G042040.1 Barley golgi 49.07 53.02
HORVU7Hr1G042050.1 Barley golgi 47.76 52.57
KRH35956 Soybean plasma membrane 48.13 52.02
HORVU6Hr1G094160.2 Barley endoplasmic reticulum, golgi, plasma membrane 47.2 51.63
KRG90814 Soybean cytosol, golgi, plasma membrane 47.76 51.61
HORVU6Hr1G082270.1 Barley golgi 49.07 51.37
PGSC0003DMT400037757 Potato plastid 44.03 51.19
PGSC0003DMT400032993 Potato plasma membrane 46.46 50.2
KRH45255 Soybean endoplasmic reticulum, peroxisome, plasma membrane 46.46 50.2
Solyc02g085870.2.1 Tomato plasma membrane 46.46 50.2
HORVU2Hr1G112840.1 Barley endoplasmic reticulum, golgi 43.66 50.0
VIT_14s0006g02990.t01 Wine grape plasma membrane 45.9 50.0
HORVU6Hr1G004830.1 Barley golgi 46.27 50.0
Bra024749.1-P Field mustard plasma membrane 46.27 49.9
CDY42109 Canola plasma membrane 46.27 49.9
PGSC0003DMT400037714 Potato plasma membrane 45.71 49.6
HORVU4Hr1G067340.2 Barley golgi 46.27 49.5
AT1G68530.1 Thale cress plasma membrane 45.9 49.5
VIT_01s0011g03490.t01 Wine grape cytosol, golgi, plasma membrane 45.71 49.4
Bra004034.1-P Field mustard plasma membrane 45.34 49.39
CDY04232 Canola plasma membrane 45.71 49.3
AT1G25450.1 Thale cress plasma membrane 45.15 49.19
CDY07381 Canola plasma membrane 45.52 49.09
Solyc02g063140.2.1 Tomato golgi 45.34 48.99
PGSC0003DMT400062136 Potato cytosol, golgi, plasma membrane 45.34 48.99
Solyc05g009270.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 44.59 48.38
HORVU7Hr1G022780.1 Barley golgi, mitochondrion 42.72 48.31
GSMUA_Achr3P07400_001 Banana plasma membrane 34.7 47.81
GSMUA_Achr5P05870_001 Banana plasma membrane 37.31 47.62
HORVU7Hr1G023280.1 Barley plasma membrane 40.11 47.57
VIT_19s0093g00440.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 42.16 45.94
HORVU7Hr1G030880.1 Barley plasma membrane 42.35 45.49
HORVU7Hr1G022580.1 Barley golgi, mitochondrion 30.78 45.21
Solyc05g009280.2.1 Tomato golgi, plasma membrane, plastid 43.28 44.7
HORVU7Hr1G022720.1 Barley plasma membrane 29.85 44.57
HORVU1Hr1G090730.1 Barley peroxisome, plasma membrane, plastid 39.18 40.54
HORVU4Hr1G073840.2 Barley golgi 37.13 39.1
HORVU4Hr1G063420.1 Barley peroxisome 38.43 37.8
HORVU7Hr1G023530.2 Barley endoplasmic reticulum, extracellular 33.96 37.53
HORVU1Hr1G089710.3 Barley plastid 40.49 36.84
HORVU6Hr1G036950.5 Barley cytosol, peroxisome 39.37 36.57
HORVU7Hr1G084610.6 Barley cytosol, mitochondrion, plastid 38.25 34.17
HORVU4Hr1G076940.1 Barley mitochondrion, peroxisome, plastid 24.63 30.14
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1UniProt:A0A287LIU2
InterPro:ACP_syn_III_CInterPro:FAE1_typ3_polyketide_synthGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629
GO:GO:0006633GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020
GO:GO:0016740GO:GO:0016746GO:GO:0016747EnsemblPlantsGene:HORVU3Hr1G069880EnsemblPlants:HORVU3Hr1G069880.2InterPro:IPR016039
PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561PANTHER:PTHR31561:SF9SUPFAM:SSF53901
InterPro:Thiolase-likeUniParc:UPI000B4648E2SEG:seg:::
Description
3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A287LIU2]
Coordinates
chrchr3H:-:529106670..529108542
Molecular Weight (calculated)
59236.5 Da
IEP (calculated)
8.750
GRAVY (calculated)
0.097
Length
536 amino acids
Sequence
(BLAST)
001: LPVAPLLCSG PGVWRSLFKV TTPLPLPRSH TTTRKRVRKR YRREAMGLSP HVVMVSRLVV DNFFRVVVAA AVVAAAVVGR ACPIIICPEE ILEKMLALPP
101: AHVLTAVILA AALEKMRRMR RTRDVYLVEY GCFRPKPCYR TPFATCLEHA HLMPYLVDEE SVAFAMRLLE RSGLGEETCV PDAYHYMPPD RSLRASRDEA
201: ELVIFAAVDD LFAKTPAINP AVDVDVLVVN CSIFTPVPVF ADMVVNKYRL RADVKVVNLS GMGCSAGLVS VGLASKILQA APEGTRVLIV STEILSSQYY
301: VGTERAMLLP NCLFRMGAAA MILSNSPTQA RFRLRRVVRT VTAARDADYR CVFQEEDDKG NTGIRLSKDL ATTAGYALKN NIAAFGPLVL PATEQLLVAL
401: SLLKRRLLRG RAKVRLYRPD FRTAFEHICI HAGGRGVIDE VQDGLGLSDD DVEASRMTLH RFGNTSSSSV LYELAYLEAK GRMKKDDRVW MISFGAGFDC
501: NSVAWECIKP AGDADGPWAD CIARYPVQLP EIDKDM
Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)
001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
Arabidopsis Description
KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.