Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G166600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 89.25 | 98.28 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 89.25 | 98.28 |
| TraesCS6A01G177700.1 | Wheat | plastid | 91.51 | 92.15 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 74.87 | 83.56 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 74.18 | 81.68 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 71.06 | 79.0 |
| GSMUA_AchrUn_... | Banana | peroxisome | 53.9 | 78.34 |
| KRH56654 | Soybean | endoplasmic reticulum | 69.15 | 78.24 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 68.8 | 77.84 |
| GSMUA_Achr10P... | Banana | plasma membrane | 58.23 | 77.78 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 68.8 | 77.69 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 67.76 | 77.43 |
| CDX70186 | Canola | plastid | 68.63 | 77.19 |
| Solyc06g065560.1.1 | Tomato | nucleus | 68.63 | 77.19 |
| PGSC0003DMT400067205 | Potato | peroxisome | 68.63 | 77.19 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 69.15 | 77.18 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 67.42 | 77.03 |
| CDX98800 | Canola | plastid | 68.98 | 76.83 |
| AT2G26640.1 | Thale cress | plasma membrane | 67.76 | 76.82 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 51.99 | 76.73 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 67.76 | 76.67 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 66.72 | 75.49 |
| Solyc12g006820.1.1 | Tomato | plasma membrane | 64.64 | 74.6 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 65.16 | 73.58 |
| HORVU7Hr1G084610.6 | Barley | cytosol, mitochondrion, plastid | 74.7 | 71.83 |
| HORVU1Hr1G090730.1 | Barley | peroxisome, plasma membrane, plastid | 63.08 | 70.27 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 71.75 | 67.1 |
| HORVU4Hr1G067340.2 | Barley | golgi | 53.38 | 61.48 |
| HORVU1Hr1G089710.3 | Barley | plastid | 59.27 | 58.06 |
| HORVU4Hr1G073840.2 | Barley | golgi | 47.66 | 54.03 |
| HORVU4Hr1G063420.1 | Barley | peroxisome | 50.43 | 53.39 |
| HORVU7Hr1G023530.2 | Barley | endoplasmic reticulum, extracellular | 42.63 | 50.72 |
| HORVU0Hr1G038430.1 | Barley | endoplasmic reticulum, plasma membrane | 39.34 | 49.35 |
| HORVU7Hr1G006910.1 | Barley | plasma membrane | 41.25 | 48.87 |
| HORVU6Hr1G073300.1 | Barley | golgi, plasma membrane | 40.9 | 48.76 |
| HORVU7Hr1G023540.1 | Barley | mitochondrion | 23.22 | 47.02 |
| HORVU1Hr1G086760.1 | Barley | cytosol | 40.73 | 46.53 |
| HORVU3Hr1G097570.1 | Barley | golgi | 38.82 | 45.81 |
| HORVU4Hr1G076940.1 | Barley | mitochondrion, peroxisome, plastid | 34.66 | 45.66 |
| HORVU6Hr1G082270.1 | Barley | golgi | 40.38 | 45.51 |
| HORVU6Hr1G004830.1 | Barley | golgi | 38.99 | 45.36 |
| HORVU7Hr1G023280.1 | Barley | plasma membrane | 35.53 | 45.35 |
| HORVU6Hr1G094160.2 | Barley | endoplasmic reticulum, golgi, plasma membrane | 37.95 | 44.69 |
| HORVU7Hr1G042040.1 | Barley | golgi | 38.3 | 44.56 |
| HORVU2Hr1G112840.1 | Barley | endoplasmic reticulum, golgi | 35.36 | 43.59 |
| HORVU7Hr1G042050.1 | Barley | golgi | 36.57 | 43.33 |
| HORVU7Hr1G022720.1 | Barley | plasma membrane | 26.34 | 42.34 |
| HORVU7Hr1G022580.1 | Barley | golgi, mitochondrion | 26.0 | 41.1 |
| HORVU7Hr1G030880.1 | Barley | plasma membrane | 34.66 | 40.08 |
| HORVU3Hr1G069880.2 | Barley | mitochondrion, plastid | 36.57 | 39.37 |
| HORVU5Hr1G087530.1 | Barley | plasma membrane | 33.1 | 39.3 |
| HORVU7Hr1G022780.1 | Barley | golgi, mitochondrion | 32.24 | 39.24 |
| HORVU5Hr1G122360.1 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 33.1 | 38.66 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | UniProt:A0A287TXT3 |
| InterPro:ACP_syn_III_C | InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 |
| GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | EnsemblPlantsGene:HORVU6Hr1G036950 | EnsemblPlants:HORVU6Hr1G036950.5 |
| InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF8 |
| SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI000B48693A | SEG:seg | : |
Description
3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A287TXT3]
Coordinates
chrchr6H:-:184812886..184815164
Molecular Weight (calculated)
63714.1 Da
IEP (calculated)
9.281
GRAVY (calculated)
-0.158
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: SPSRVVRDGK VRRETSAAPE GGNRGGGGGG GPGAVSEAES GGTDRRSGHL SHRGTMSMED STPPAGANAG ERASSPSPSR RLPDFLQSVR LKYVKLGYHY
101: LITHGMYLLL TPLIVLIAVH LSTLSPGDVA DLWTHLRFNL LSVIACSTLL VFLSTVYFLT RPRSVYLVDF GCYKPGPERR CSRDTFMRCS KLTGNFTEAN
201: LDFQRKILER SGLGEDTYIP PALVTVPPNP SMDLARQEAQ VCMFGAIDNM LAKTGVKPKD IGILVVNCSL FNPTPSLSAM VVNHYKLRGN IISYNLGGMG
301: CSAGLLSIDL AKDLLQVHPN SYAMVVSTEN ITLNWYFGNN RSMLVSNCLF RMGCAAILLS NKRSDRRRSK YELVHTVRTH KGADDKCFSC VTQEEDDSGK
401: VGVALSKDLM AVAGDALKTN ITTLGPLVLP FSEQLLFMVT LVGKKLFKMK IKPYIPDFKL AFEHFCIHAG GRAVLDEIEK NMDLTDWHME PSRMTLFRFG
501: NTSSSSLWYE LAYSEAKGRI RRRDRIWQIA FGSGFKCNSA VWKALRSVNP AKEQNNPWMD EIDTFPVEVP KVSKVAE
101: LITHGMYLLL TPLIVLIAVH LSTLSPGDVA DLWTHLRFNL LSVIACSTLL VFLSTVYFLT RPRSVYLVDF GCYKPGPERR CSRDTFMRCS KLTGNFTEAN
201: LDFQRKILER SGLGEDTYIP PALVTVPPNP SMDLARQEAQ VCMFGAIDNM LAKTGVKPKD IGILVVNCSL FNPTPSLSAM VVNHYKLRGN IISYNLGGMG
301: CSAGLLSIDL AKDLLQVHPN SYAMVVSTEN ITLNWYFGNN RSMLVSNCLF RMGCAAILLS NKRSDRRRSK YELVHTVRTH KGADDKCFSC VTQEEDDSGK
401: VGVALSKDLM AVAGDALKTN ITTLGPLVLP FSEQLLFMVT LVGKKLFKMK IKPYIPDFKL AFEHFCIHAG GRAVLDEIEK NMDLTDWHME PSRMTLFRFG
501: NTSSSSLWYE LAYSEAKGRI RRRDRIWQIA FGSGFKCNSA VWKALRSVNP AKEQNNPWMD EIDTFPVEVP KVSKVAE
001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
Arabidopsis Description
KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.