Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- peroxisome 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT2G26640.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 93.05 | 92.69 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 92.66 | 92.49 |
| Os05t0574600-01 | Rice | endoplasmic reticulum, peroxisome, plastid | 81.66 | 81.35 |
| EES19987 | Sorghum | cytosol, endoplasmic reticulum, plastid | 79.92 | 80.7 |
| Zm00001d039094_P001 | Maize | cytosol | 77.99 | 79.37 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 74.52 | 75.54 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 71.81 | 73.66 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 71.62 | 73.47 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 71.81 | 72.94 |
| CDX70186 | Canola | plastid | 72.01 | 72.71 |
| KRH56654 | Soybean | endoplasmic reticulum | 71.24 | 72.35 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 71.04 | 72.16 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 71.04 | 72.16 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 72.01 | 72.15 |
| AT2G26640.1 | Thale cress | plasma membrane | 70.85 | 72.1 |
| PGSC0003DMT400067205 | Potato | peroxisome | 71.24 | 71.93 |
| Solyc06g065560.1.1 | Tomato | nucleus | 71.24 | 71.93 |
| CDX98800 | Canola | plastid | 71.81 | 71.81 |
| Solyc12g006820.1.1 | Tomato | plasma membrane | 67.18 | 69.6 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 67.76 | 68.69 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 70.27 | 63.08 |
| HORVU7Hr1G084610.6 | Barley | cytosol, mitochondrion, plastid | 72.78 | 62.83 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 72.97 | 61.26 |
| HORVU4Hr1G067340.2 | Barley | golgi | 57.72 | 59.68 |
| HORVU1Hr1G089710.3 | Barley | plastid | 65.25 | 57.39 |
| HORVU4Hr1G073840.2 | Barley | golgi | 55.41 | 56.39 |
| HORVU4Hr1G063420.1 | Barley | peroxisome | 57.34 | 54.5 |
| HORVU7Hr1G023530.2 | Barley | endoplasmic reticulum, extracellular | 48.65 | 51.96 |
| HORVU0Hr1G038430.1 | Barley | endoplasmic reticulum, plasma membrane | 44.98 | 50.65 |
| HORVU6Hr1G073300.1 | Barley | golgi, plasma membrane | 46.53 | 49.79 |
| HORVU1Hr1G086760.1 | Barley | cytosol | 48.26 | 49.51 |
| HORVU7Hr1G006910.1 | Barley | plasma membrane | 46.33 | 49.28 |
| HORVU7Hr1G023540.1 | Barley | mitochondrion | 26.83 | 48.77 |
| HORVU3Hr1G097570.1 | Barley | golgi | 44.79 | 47.44 |
| HORVU6Hr1G082270.1 | Barley | golgi | 46.14 | 46.68 |
| HORVU4Hr1G076940.1 | Barley | mitochondrion, peroxisome, plastid | 38.8 | 45.89 |
| HORVU7Hr1G042040.1 | Barley | golgi | 43.82 | 45.77 |
| HORVU6Hr1G094160.2 | Barley | endoplasmic reticulum, golgi, plasma membrane | 42.86 | 45.31 |
| HORVU7Hr1G042050.1 | Barley | golgi | 42.47 | 45.17 |
| HORVU7Hr1G023280.1 | Barley | plasma membrane | 39.38 | 45.13 |
| HORVU2Hr1G112840.1 | Barley | endoplasmic reticulum, golgi | 40.35 | 44.66 |
| HORVU6Hr1G004830.1 | Barley | golgi | 42.66 | 44.56 |
| HORVU7Hr1G022720.1 | Barley | plasma membrane | 29.34 | 42.34 |
| HORVU7Hr1G022780.1 | Barley | golgi, mitochondrion | 37.26 | 40.72 |
| HORVU7Hr1G030880.1 | Barley | plasma membrane | 38.8 | 40.28 |
| HORVU5Hr1G087530.1 | Barley | plasma membrane | 36.87 | 39.3 |
| HORVU3Hr1G069880.2 | Barley | mitochondrion, plastid | 40.54 | 39.18 |
| HORVU5Hr1G122360.1 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 37.26 | 39.07 |
| HORVU7Hr1G022580.1 | Barley | golgi, mitochondrion | 27.22 | 38.63 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0016746 | GO:GO:0016747 | EnsemblPlantsGene:HORVU1Hr1G090730 | EnsemblPlants:HORVU1Hr1G090730.1 | InterPro:IPR016039 | UniProt:M0YY33 |
| PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF65 | SUPFAM:SSF53901 |
| TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI0002957D14 | SEG:seg | : | : |
Description
3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:M0YY33]
Coordinates
chrchr1H:-:546836401..546839215
Molecular Weight (calculated)
56935.9 Da
IEP (calculated)
9.078
GRAVY (calculated)
-0.038
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAPAAPA RGDFTRSVKL KYVKLGYHCL ITHGAYLAVA PLPGLVAAHL STFTPSDLAG LWAGVLHHNL AALIACFAFM VAACTAYLVT RPRPVYLVDF
101: ACYKPDDARK CSRARFMDCT EKLGTFTDDN VEFQRRIVER SGLGEDTYLP EAVLNLPPNP SMANARAEAE MVMFGALDQL FAKTGVRPKD IGVLVVNCSL
201: FNPTPSLSAM VINHYKLRGN IVSYNLGGMG CSAGLIAVDL AKDLLQAQPG TYAVVISMEN ITLNWYFGND RSMLVSNCLF RMGGAAILLS NRRSARRRSK
301: YQLVHTVRTH KGADDKAFGC VLQQEDEAGK RGVSLSKDLM AIAGGALKTN ITTLGPLVLP FSEQLLFFAT LAVKKLLNDK VKPYIPDFKL AFEHFCIHAG
401: GRAVLDELER NLQLSEWHME PSRMTLHRFG NTSSSSLWYE LAYAEAKGRI RKGDRTWQIA FGSGFKCNSA VWRALRSVNP ANPKDVAGNP WADEIHRFPV
501: PVPKFAAIDP TPSDTHHQ
101: ACYKPDDARK CSRARFMDCT EKLGTFTDDN VEFQRRIVER SGLGEDTYLP EAVLNLPPNP SMANARAEAE MVMFGALDQL FAKTGVRPKD IGVLVVNCSL
201: FNPTPSLSAM VINHYKLRGN IVSYNLGGMG CSAGLIAVDL AKDLLQAQPG TYAVVISMEN ITLNWYFGND RSMLVSNCLF RMGGAAILLS NRRSARRRSK
301: YQLVHTVRTH KGADDKAFGC VLQQEDEAGK RGVSLSKDLM AIAGGALKTN ITTLGPLVLP FSEQLLFFAT LAVKKLLNDK VKPYIPDFKL AFEHFCIHAG
401: GRAVLDELER NLQLSEWHME PSRMTLHRFG NTSSSSLWYE LAYAEAKGRI RKGDRTWQIA FGSGFKCNSA VWRALRSVNP ANPKDVAGNP WADEIHRFPV
501: PVPKFAAIDP TPSDTHHQ
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.