Factsheet for TraesCS1D01G420900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	endoplasmic reticulum, peroxisome
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT2G26640.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT2G26640.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT2G26640.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT2G26640.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT2G26640.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G413400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	97.11	96.92
HORVU1Hr1G090730.1	Barley	peroxisome, plasma membrane, plastid	92.49	92.66
Os05t0574600-01	Rice	endoplasmic reticulum, peroxisome, plastid	80.54	80.38
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	79.0	79.92
Zm00001d039094_P001	Maize	cytosol	76.69	78.19
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	73.41	74.56
Solyc08g067410.1.1	Tomato	plasma membrane	71.1	73.07
PGSC0003DMT400019029	Potato	plasma membrane	70.91	72.87
KRH56654	Soybean	endoplasmic reticulum	71.1	72.35
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	70.71	71.96
TraesCS7D01G350500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	72.06	71.78
CDX70186	Canola	plastid	70.71	71.54
AT2G26640.1	Thale cress	plasma membrane	70.13	71.51
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	70.13	71.37
Solyc06g065560.1.1	Tomato	nucleus	70.33	71.15
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	70.71	70.99
PGSC0003DMT400067205	Potato	peroxisome	70.13	70.96
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	69.56	70.78
CDX98800	Canola	plastid	70.52	70.66
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	70.13	69.47
Solyc12g006820.1.1	Tomato	plasma membrane	66.09	68.6
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	66.67	67.71
TraesCS1D01G414600.1	Wheat	peroxisome	64.74	64.0
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	62.81	63.67
VIT_11s0016g04700.t01	Wine grape	plastid	72.64	61.1
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	63.2	60.18
TraesCS4D01G242200.1	Wheat	mitochondrion, plasma membrane	57.03	59.68
TraesCS4D01G226100.1	Wheat	peroxisome	56.65	54.55
TraesCS4D01G277300.1	Wheat	golgi	53.37	54.42
TraesCS1D01G374700.1	Wheat	plasma membrane	51.06	52.27
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	54.14	52.04
TraesCS7D01G208600.1	Wheat	cytosol	38.15	51.83
TraesCS1D01G401000.1	Wheat	plasma membrane	46.05	51.51
TraesCS7D01G519300.1	Wheat	golgi, plasma membrane	46.63	50.63
TraesCS4D01G008100.1	Wheat	plasma membrane	41.43	50.23
TraesCS7D01G519400.1	Wheat	plasma membrane	46.24	50.1
TraesCS7D01G035700.1	Wheat	plasma membrane	46.63	49.9
TraesCS6D01G274600.1	Wheat	golgi, plasma membrane	46.44	49.79
TraesCS7D01G209400.1	Wheat	cytosol	35.65	49.47
TraesCS7D01G029500.1	Wheat	plasma membrane	43.55	49.45
TraesCS2D01G508000.1	Wheat	mitochondrion	30.25	49.37
TraesCS3D01G444000.1	Wheat	golgi	46.05	48.88
TraesCS4D01G273400.1	Wheat	endoplasmic reticulum	45.28	48.65
TraesCS7D01G089200.1	Wheat	endoplasmic reticulum, plasma membrane	43.93	48.2
TraesCS7D01G102300.1	Wheat	mitochondrion	26.78	47.93
TraesCS7D01G208500.1	Wheat	golgi	45.28	47.57
TraesCS1D01G042300.1	Wheat	golgi	42.97	46.65
TraesCS6D01G321600.1	Wheat	golgi	45.09	46.52
TraesCS1D01G039200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	42.97	45.88
TraesCS5D01G089800.1	Wheat	golgi	43.16	45.81
TraesCS2D01G508200.1	Wheat	plasma membrane, plastid	39.5	44.76
TraesCS7D01G208800.1	Wheat	endoplasmic reticulum	41.62	44.54
TraesCS2D01G508300.1	Wheat	endoplasmic reticulum, plasma membrane	39.11	44.03
TraesCS7D01G208700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	38.92	43.72
TraesCS3D01G279300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	40.27	42.92
TraesCS7D01G102900.1	Wheat	golgi, plasma membrane, plastid	39.5	42.71
TraesCS7D01G102800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	36.8	42.54
TraesCS4D01G008200.1	Wheat	plasma membrane	40.27	42.48
TraesCS7D01G102400.1	Wheat	endoplasmic reticulum, plastid, vacuole	38.34	41.46
TraesCS5D01G017000.1	Wheat	endoplasmic reticulum, golgi, plastid	36.8	40.47
TraesCS7D01G102000.1	Wheat	mitochondrion, plastid	38.54	40.24
TraesCS1D01G420600.2	Wheat	cytosol	8.09	19.0

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	EnsemblPlantsGene:TraesCS1D01G420900	EnsemblPlants:TraesCS1D01G420900.1
TIGR:cd00831	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:477189031..477190590

Molecular Weight (calculated)

57161.1 Da

IEP (calculated)

9.032

GRAVY (calculated)

-0.092

Length

519 amino acids

Sequence
(BLAST)

001: MADPAQPAPA RGDFTRSVKL KYVKLGYHYL ITHGAYLAVA PLPGLVAAHL STFTMQDLAD LWAGVLHHSL GSLLACLAFL VAACTAYLAT RPRPVYLVDF
101: ACYKPDDARK CSRARFMDCT EKLGTFTDDN VEFQRRIVER SGLGEETYLP EAVLNLPPNP SMANARKEAE LVMFGALDQL FAKTGVKPKD IGVLVVNCSL
201: FNPTPSLSAM VVNKYELRGN IVSYNLGGMG CSAGLIAVDL AKDLLQAQPG TYAVVISMEN ITLNWYFGND RSMLVSNCLF RMGGAAILLS NRRSARRRSK
301: YQLVHTVRTH KGADDKAFRC VYQQEDESGK RGVSLSKDLM GIAGGALKTN ITTLGPLVLP LSEQLLFFAT LAAKKLVNAK VEPYIPDFKL AFEHFCIHAG
401: GRAVLDKMES NLQLTEWHME PSRMTLHRFG NTSSSSLWYE LAYAEAKGRI RKGDRTWQIA FGSGFKCNSA VWRALRSVNP ANPRDVAGNP WADEIHRFPV
501: PVPKFSAIDP PTPSSDTQE

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.