Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- cytosol 1
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26640.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | peroxisome | 63.8 | 82.12 |
| Solyc06g065560.1.1 | Tomato | nucleus | 82.19 | 81.87 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 80.63 | 81.58 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 80.63 | 81.58 |
| AT2G26640.1 | Thale cress | plasma membrane | 81.21 | 81.53 |
| CDX70186 | Canola | plastid | 81.8 | 81.48 |
| PGSC0003DMT400067205 | Potato | peroxisome | 81.8 | 81.48 |
| CDX98800 | Canola | plastid | 82.0 | 80.89 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 81.8 | 80.85 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 61.64 | 80.56 |
| GSMUA_Achr10P... | Banana | plasma membrane | 68.1 | 80.56 |
| Os05t0574600-01 | Rice | endoplasmic reticulum, peroxisome, plastid | 81.41 | 80.0 |
| Zm00001d046444_P001 | Maize | plasma membrane | 80.43 | 79.81 |
| EER88601 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 80.23 | 79.46 |
| Os06t0598800-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 79.45 | 78.23 |
| Solyc12g006820.1.1 | Tomato | plasma membrane | 75.73 | 77.4 |
| EES19987 | Sorghum | cytosol, endoplasmic reticulum, plastid | 77.1 | 76.8 |
| TraesCS7B01G254900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 78.28 | 76.78 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 76.13 | 76.13 |
| VIT_05s0020g04540.t01 | Wine grape | plasma membrane | 77.5 | 76.01 |
| TraesCS7D01G350500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 77.3 | 75.82 |
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 77.5 | 75.57 |
| TraesCS6D01G166600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 77.5 | 75.57 |
| HORVU1Hr1G090730.1 | Barley | peroxisome, plasma membrane, plastid | 75.54 | 74.52 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 75.34 | 74.47 |
| TraesCS7A01G372300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 76.52 | 74.33 |
| Zm00001d039094_P001 | Maize | cytosol | 73.78 | 74.07 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 74.95 | 73.65 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 75.34 | 73.47 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 74.56 | 73.41 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 73.97 | 72.83 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 87.28 | 72.29 |
| TraesCS6A01G177700.1 | Wheat | plastid | 77.69 | 69.28 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 77.69 | 68.8 |
| VIT_03s0063g02640.t01 | Wine grape | plasma membrane | 66.54 | 67.46 |
| HORVU7Hr1G084610.6 | Barley | cytosol, mitochondrion, plastid | 78.08 | 66.5 |
| VIT_18s0001g12550.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 66.14 | 66.4 |
| VIT_15s0048g02720.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.58 | 62.26 |
| VIT_14s0006g02990.t01 | Wine grape | plasma membrane | 59.49 | 61.79 |
| VIT_01s0011g03490.t01 | Wine grape | cytosol, golgi, plasma membrane | 59.49 | 61.29 |
| VIT_07s0141g00090.t01 | Wine grape | cytosol | 48.34 | 57.58 |
| VIT_19s0093g00440.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 54.99 | 57.11 |
| VIT_04s0008g02250.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 56.75 | 54.72 |
| VIT_07s0141g00070.t01 | Wine grape | cytosol | 40.7 | 52.0 |
| VIT_07s0141g00030.t01 | Wine grape | endoplasmic reticulum, extracellular | 43.64 | 50.34 |
| VIT_09s0070g00300.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 49.71 | 50.2 |
| VIT_12s0034g01840.t01 | Wine grape | endoplasmic reticulum, golgi | 44.42 | 49.46 |
| VIT_10s0042g01230.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 42.07 | 47.99 |
| VIT_07s0141g00060.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 43.05 | 47.21 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | EntrezGene:100259490 | wikigene:100259490 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 |
| MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C | ProteinID:CCB46766 | ProteinID:CCB46766.1 | UniProt:F6H3S9 | InterPro:FAE1_typ3_polyketide_synth |
| EMBL:FN595231 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | EntrezGene:LOC100259490 | wikigene:LOC100259490 |
| PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF19 | SUPFAM:SSF53901 |
| TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI00015C8F6C | ArrayExpress:VIT_04s0008g04710 | EnsemblPlantsGene:VIT_04s0008g04710 | EnsemblPlants:VIT_04s0008g04710.t01 |
| unigene:Vvi.15768 | RefSeq:XP_002284751 | RefSeq:XP_002284751.1 | SEG:seg | : | : |
Description
3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6H3S9]
Coordinates
chr4:-:4158184..4159738
Molecular Weight (calculated)
57717.7 Da
IEP (calculated)
9.491
GRAVY (calculated)
-0.054
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MSETNPNTPL IPPSPSRKLP DFKKSVKLKY VKLGYHYLIT HGMYLFLSPL IVLIAAQLST FSLQDLHDLW ENLKFNLISV ILCSALLVFL STLFVLTRPR
101: PVYLVDFSCY KPDDARKCSR QIFMDRSKQI GSFTEENIEF QKKIIERSGL GESTYLPEAV INVPPNPSMA EARKEAEMVM FGALDQLFEK TMVKPKDIGI
201: LIVNCSLFNP TPSLSAMVIN HYKLRGNIIS YNLGGMGCSA GLISIDLAKN LLQVHPNSYA LVISMENITL NWYFGNERSM LVSNCLFRMG GAAILLSNKW
301: SDRRRSKYQL VHTVRTHKGS DDKCFACVTQ KEDSNGKIGV SLSKDLMAVA GDALKTNITT LGPLVLPMSE QLLFFATLVG KKVFKMKVKP YIPDFKLAFE
401: HFCIHAGGRA VLDELEKNLQ LSDWHMEPSR MTLYRFGNTS SSSLWYELAY TEAKGRVKKG DRTWQIAFGS GFKCNSAIWK ALRTVNPAKE KNPWMDEIHW
501: FPVDVPMVST L
101: PVYLVDFSCY KPDDARKCSR QIFMDRSKQI GSFTEENIEF QKKIIERSGL GESTYLPEAV INVPPNPSMA EARKEAEMVM FGALDQLFEK TMVKPKDIGI
201: LIVNCSLFNP TPSLSAMVIN HYKLRGNIIS YNLGGMGCSA GLISIDLAKN LLQVHPNSYA LVISMENITL NWYFGNERSM LVSNCLFRMG GAAILLSNKW
301: SDRRRSKYQL VHTVRTHKGS DDKCFACVTQ KEDSNGKIGV SLSKDLMAVA GDALKTNITT LGPLVLPMSE QLLFFATLVG KKVFKMKVKP YIPDFKLAFE
401: HFCIHAGGRA VLDELEKNLQ LSDWHMEPSR MTLYRFGNTS SSSLWYELAY TEAKGRVKKG DRTWQIAFGS GFKCNSAIWK ALRTVNPAKE KNPWMDEIHW
501: FPVDVPMVST L
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.