Factsheet for VIT_10s0042g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12070	Soybean	endoplasmic reticulum, golgi	64.06	65.38
Bra020664.1-P	Field mustard	plastid	55.36	55.98
AT5G49070.1	Thale cress	plasma membrane, vacuole	57.81	55.82
CDY05644	Canola	plasma membrane, plastid, vacuole	56.47	55.36
CDY33931	Canola	plastid	56.47	55.36
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	53.35	52.07
VIT_14s0006g02990.t01	Wine grape	plasma membrane	52.68	47.97
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	52.9	47.78
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	50.22	45.73
VIT_03s0063g02640.t01	Wine grape	plasma membrane	49.55	44.05
VIT_07s0141g00070.t01	Wine grape	cytosol	39.29	44.0
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.33	43.42
VIT_07s0141g00090.t01	Wine grape	cytosol	41.52	43.36
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	47.99	42.07
VIT_05s0020g04540.t01	Wine grape	plasma membrane	47.99	41.27
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	39.96	40.41
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	41.07	39.48
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.09	38.11
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.52	36.76
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	43.3	36.6
VIT_11s0016g04700.t01	Wine grape	plastid	48.66	35.33

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100257977	wikigene:100257977	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	ProteinID:CBI29070	ProteinID:CBI29070.3	UniProt:D7TEZ7	InterPro:FAE1_typ3_polyketide_synth
EMBL:FN595766	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100257977	wikigene:LOC100257977
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF6	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0001BE316E	ArrayExpress:VIT_10s0042g01230	EnsemblPlantsGene:VIT_10s0042g01230	EnsemblPlants:VIT_10s0042g01230.t01
RefSeq:XP_003633061	RefSeq:XP_003633061.1	SEG:seg	:	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:D7TEZ7]

Coordinates

chr10:-:15223735..15225081

Molecular Weight (calculated)

50320.5 Da

IEP (calculated)

9.339

GRAVY (calculated)

0.139

Length

448 amino acids

Sequence
(BLAST)

001: MAIVLEINMG SSEFIFFVIH HFAVVVAAAL VIIYLVHKRK ASIYLLDFTC YRPPASCRVP ISMHRELVSL DTRFDPDSIA FQIKILERSG FSSETCVPPS
101: FCEHPIRKSL SFALEEASLV IFSVVTDLFK KTNINPKSID ILVLNSSMFS PTPSLSAMVI NKFRMRSNIR SFNLSGMGCS AGIVSVGLAR DLLRVHRNSL
201: ALIVSTEVIN LNWYTGKNRS MLLTNCLFRM GGAAILMSSQ TQDMNKAKYV LQHLVRTNRA GDDQSYACVF QDMDLENNVG VSISKGIINV AGDALKANMA
301: STGPLVLPFS EQFLYGLSII CRKIWRRSIY VPNFRRAFEH FCIHAGGRAV IEAMEKSLRL KKEDVEASSM TLYRFGNTSS SSIWYELSYL EAKGRMKKGD
401: RVWQIAFGSG FKCNSAIWKC IHEVGVETNV WSDRIHSYPI HVLDILKD

Best Arabidopsis Sequence Match ( AT5G49070.1 )
(BLAST)

001: MNQTIHRVSP ISMSISELTT LLSSGVSVFE IFAGLLVVHL IYQRIRTRVK VYLLDFTCYR APDSNRVPMS TLIETIYLDD KLDQESIDFQ ARILERSWLS
101: NQTSIPRSLM EIPLKKSLSS VKIETMTTIF TSVEDLLRKN KLSPRSIDIL ITNCSLHSPS PSLSAMVINK FHMRSNIKSF NLSGMGCAAG ILSVNLANDL
201: LQAHRGSLAL IVSTEALNTH WYIGKDRSML LTNCLFRMGA AAVLMSSNDH DRDNAKYELL HVVRKNKAKD DRAYRCIYQD IDSDEKQGVS ITKDVISVAG
301: DMLKMNLTSL GPLVLPYLEQ FQYVIQHILC KKLKIYESNS SYTPNFKTAF EHFCIHTGGR AVIQAMEMNL KLTKVDIEPS KMTLHRFGNT SSSSIWYALS
401: YLEAKRRMKK GDRVLQIAFG SGFKCNSAVW RCIRKVEPNT ENKWLDFIDS YPVDVPDSTN IRPG

Arabidopsis Description

KCS21Probable 3-ketoacyl-CoA synthase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH27]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.