Factsheet for VIT_03s0063g02640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89699	Canola	cytosol	54.56	84.62
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	84.33	83.5
KRH51526	Soybean	plasma membrane	72.62	82.62
CDY47457	Canola	cytosol, endoplasmic reticulum, plasma membrane	62.1	80.46
Bra037304.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	72.22	79.82
CDX71278	Canola	cytosol, peroxisome, plasma membrane	79.76	79.29
CDY46211	Canola	cytosol, peroxisome, plasma membrane	79.17	78.7
Bra001974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	78.97	78.5
AT2G16280.1	Thale cress	golgi, peroxisome, plasma membrane	79.37	78.12
CDY10355	Canola	cytosol	37.9	74.03
AT4G34510.1	Thale cress	plasma membrane	71.43	73.92
CDX76286	Canola	golgi	69.44	73.84
CDY46243	Canola	golgi	69.25	73.63
Bra034634.1-P	Field mustard	golgi	69.05	73.42
CDY26762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	66.27	70.76
CDY47458	Canola	cytosol	6.75	68.0
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	67.46	66.54
VIT_14s0006g02990.t01	Wine grape	plasma membrane	64.68	66.26
CDY02266	Canola	endoplasmic reticulum, golgi, plasma membrane	57.54	65.17
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	63.89	64.92
CDX89700	Canola	endoplasmic reticulum, golgi, plasma membrane	55.36	64.73
VIT_05s0020g04540.t01	Wine grape	plasma membrane	66.47	64.3
CDY17465	Canola	plasma membrane	60.52	64.21
Bra013081.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	61.51	63.66
CDX75415	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	58.13	63.15
CDX69040	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	58.13	63.15
Bra017641.1-P	Field mustard	golgi	60.12	62.86
CDX72475	Canola	endoplasmic reticulum, golgi	52.58	62.65
Bra034635.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	62.7	62.45
Bra036405.1-P	Field mustard	cytosol, plasma membrane, plastid	56.94	62.26
CDX76287	Canola	endoplasmic reticulum, golgi, plasma membrane	62.3	62.06
AT4G34520.1	Thale cress	golgi	62.1	61.86
CDY49290	Canola	endoplasmic reticulum, golgi	51.79	61.7
AT2G15090.1	Thale cress	golgi	58.73	61.54
AT4G34250.1	Thale cress	endoplasmic reticulum, golgi	59.72	61.05
CDX71202	Canola	endoplasmic reticulum, golgi, plasma membrane	57.74	61.01
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	57.54	58.94
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.11	58.11
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	59.92	56.98
VIT_11s0016g04700.t01	Wine grape	plastid	68.65	56.08
VIT_07s0141g00090.t01	Wine grape	cytosol	44.25	51.98
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	44.05	49.55
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.6	49.41
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	44.44	48.8
VIT_07s0141g00070.t01	Wine grape	cytosol	37.3	47.0
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	40.28	45.82
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	40.87	44.21

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100853861	wikigene:100853861	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	EMBL:AM426309	ProteinID:CAN68997	ProteinID:CAN68997.1	ProteinID:CCB56985
ProteinID:CCB56985.1	UniProt:F6HQM8	InterPro:FAE1_typ3_polyketide_synth	EMBL:FN596006	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	EntrezGene:LOC100853861	wikigene:LOC100853861	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002108034
ArrayExpress:VIT_03s0063g02640	EnsemblPlantsGene:VIT_03s0063g02640	EnsemblPlants:VIT_03s0063g02640.t01	RefSeq:XP_003631663	RefSeq:XP_003631663.1	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6HQM8]

Coordinates

chr3:+:5869868..5871680

Molecular Weight (calculated)

56456.7 Da

IEP (calculated)

9.292

GRAVY (calculated)

-0.051

Length

504 amino acids

Sequence
(BLAST)

001: MNSGGEVGVQ IQQGRGLPDF LQSVNLKYVK LGYHYLITHL LTLCLIPLMA LIIVEASQKN PDDIHQLWLH LQYNLVSIII CSAFLVFGST VYIMTRPRSI
101: YLVDYACYRP PSHLQVRYHQ FMEHSRLTGD FDESALEFQR KILERSGLGE ETYVPEAMHY IPPQPSMAAA REEAEQVMFG SLDKLFANTN VKPKDIGILV
201: VNCSLFNPTP SLSAMIVNKY KLRGNIRSFN LGGMGCSAGV IAVDLAKDML QVHRNTYAVV VSTENITQNW YFGNKKSMLI PNCLFRVGGA AVLLSNKSGD
301: RRRAKYKLVH LVRTHRGADD KAFRCVYQEQ DDAGKTGVSL SKDLMAIAGG ALKTNITTLG PLVLPISEQL LFFATLVAKK LFNAKVKPYI PDFKLAFEHF
401: CIHAGGRAVI DELEKNLQLL PSHVEASRMT LHRFGNTSSS SIWYELSYIE AKGRMRKGNR VWQIAFGSGF KCNSAVWQAL RNVNPSPNGP WEDCINKYPV
501: EVVA

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.