Factsheet for VIT_04s0008g02250.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52284	Soybean	nucleus	83.4	82.62
KRH61616	Soybean	nucleus	83.4	82.46
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	77.17	76.88
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	78.3	76.85
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	70.57	76.8
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	76.04	76.76
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.83	76.28
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	77.74	75.05
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	77.55	74.73
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	62.83	74.66
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	76.98	74.59
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	76.98	74.45
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	76.23	73.86
Os03t0181500-01	Rice	plasma membrane	71.89	70.3
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	71.51	70.19
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	71.89	70.17
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	71.32	70.0
TraesCS4B01G297500.1	Wheat	golgi	71.32	70.0
Zm00001d027904_P001	Maize	plastid	71.51	69.8
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	58.3	69.28
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	53.96	65.3
VIT_03s0063g02640.t01	Wine grape	plasma membrane	56.98	59.92
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.47	58.1
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	54.72	56.97
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	54.72	56.75
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	53.02	56.65
VIT_14s0006g02990.t01	Wine grape	plasma membrane	51.32	55.28
VIT_05s0020g04540.t01	Wine grape	plasma membrane	53.96	54.89
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	53.58	53.58
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	47.92	51.63
VIT_07s0141g00090.t01	Wine grape	cytosol	40.94	50.58
VIT_11s0016g04700.t01	Wine grape	plastid	54.91	47.16
VIT_07s0141g00070.t01	Wine grape	cytosol	33.96	45.0
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	36.23	43.34
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	36.6	43.3
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	36.79	42.48
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	36.6	41.63

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100252499	wikigene:100252499	InterPro:3-ktacl-CoA_syn	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	ProteinID:CCB46630	ProteinID:CCB46630.1	UniProt:F6H2U5	InterPro:FAE1_typ3_polyketide_synth	EMBL:FN595231
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100252499	wikigene:LOC100252499	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	SUPFAM:SSF53901	TIGR:TC63173
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI00015C9056	ArrayExpress:VIT_04s0008g02250	EnsemblPlantsGene:VIT_04s0008g02250	EnsemblPlants:VIT_04s0008g02250.t01
unigene:Vvi.9556	RefSeq:XP_002282234	RefSeq:XP_002282234.1	SEG:seg	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6H2U5]

Coordinates

chr4:+:1854711..1857108

Molecular Weight (calculated)

60115.7 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.175

Length

530 amino acids

Sequence
(BLAST)

001: MAGEQHLLAT EIVNRGIESS GPNAGSQTFS VRVRRRLPDF VQSVNLKYVK LGYHYLINHA IYLATIPVLV LVFSAEVGSL NKEELWKKLW EDARYDLATV
101: LGFFGVFVFT LSVYIMSRPR SIYLIDFACF KPHDDLKLSK QQLIEAVRRS GKHDEASIEF QKRILMSSGI GDETYIPKAV MAGENCATMK EGRAEAGMVM
201: FGALDELFEK TRVRPKDVGV LVVNCSIFNP TPSLSAMIIN HYKMRGNILS FNLGGMGCSA GVIALDLARD MLESNPNNYA VVVSTEMVGY NWYPGKERSM
301: IIPNCFFRMG CSALLLSNRR SDYRHAKYRL EHIVRTHKGA DDRSFRCVYQ EEDSERFKGL RVSKDLIEIG GDALKTNITT LGPLVLPFSE QLLFFATLVW
401: RNLFGHGGPQ QPPTKPYIPD YKLAFEHFCV HAASKTVLDE LQRNLGLSDS NVEASRMTLH RFGNTSSSSI WYELAYLEAK ERVKRGDRVW QISFGSGFKC
501: NSLVWRAMRR VKKPSSNPWL DCLDRYPVYH

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.