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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01120.1 OQU92006 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028406_P001 Maize peroxisome 95.99 96.34
Zm00001d047931_P001 Maize peroxisome 92.71 93.22
Os03t0245700-02 Rice cytosol, peroxisome, plastid 88.16 90.98
TraesCS4D01G226100.1 Wheat peroxisome 85.79 87.38
TraesCS4A01G068400.1 Wheat peroxisome 85.61 86.88
HORVU4Hr1G063420.1 Barley peroxisome 86.16 86.79
TraesCS4B01G225500.1 Wheat peroxisome 85.61 86.08
EER91722 Sorghum peroxisome 76.14 78.13
GSMUA_Achr1P02540_001 Banana cytosol 58.83 76.18
CDY15199 Canola cytosol 43.35 70.0
VIT_15s0048g02720.t01 Wine grape cytosol, peroxisome, plasma membrane 60.47 62.64
AT1G01120.1 Thale cress plasma membrane 59.56 61.93
Solyc10g009240.2.1 Tomato peroxisome 59.56 61.81
KRH68953 Soybean cytosol, golgi, nucleus 59.56 61.7
PGSC0003DMT400028047 Potato plasma membrane 59.2 60.75
Bra032621.1-P Field mustard plasma membrane 53.92 60.29
CDY37475 Canola plasma membrane 51.18 58.79
CDY32443 Canola plasma membrane 51.18 58.79
CDX90012 Canola cytosol 56.28 58.41
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 54.28 58.09
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 54.46 57.95
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 55.01 57.63
EES19964 Sorghum endoplasmic reticulum, plasma membrane, plastid 51.37 54.23
EER92628 Sorghum plasma membrane 48.45 53.85
AT2G46720.1 Thale cress endoplasmic reticulum, plasma membrane 44.81 52.79
AT3G10280.1 Thale cress endoplasmic reticulum, plasma membrane 44.08 52.72
KXG28804 Sorghum plastid 49.73 52.3
EER95395 Sorghum cytosol, peroxisome, plasma membrane 48.45 48.99
EER95458 Sorghum mitochondrion 46.63 48.39
KXG19727 Sorghum mitochondrion, plastid 42.99 47.87
EER89559 Sorghum mitochondrion, plasma membrane 42.26 47.35
KXG30818 Sorghum golgi, mitochondrion 41.89 47.23
EES08876 Sorghum cytosol, endoplasmic reticulum, plasma membrane 45.72 47.18
EER91618 Sorghum plastid 44.26 46.37
EER89567 Sorghum endoplasmic reticulum, golgi, plastid 37.89 45.61
KXG19733 Sorghum endoplasmic reticulum, plasma membrane, vacuole 39.34 44.91
OQU76197 Sorghum golgi 37.89 43.42
EER88189 Sorghum endoplasmic reticulum, plasma membrane, vacuole 37.16 42.32
EES00849 Sorghum endoplasmic reticulum, golgi 37.16 41.3
EES03073 Sorghum endoplasmic reticulum, golgi, plasma membrane 36.79 41.22
CDY41551 Canola golgi 45.17 39.43
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 45.17 38.93
EES19986 Sorghum cytosol 6.56 16.29
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1UniProt:A0A1B6QPD4
InterPro:ACP_syn_III_CInterPro:FAE1_typ3_polyketide_synthGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629
GO:GO:0006633GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016740GO:GO:0016746GO:GO:0016747InterPro:IPR016039EnsemblPlants:KXG39781
ProteinID:KXG39781ProteinID:KXG39781.1PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561
PANTHER:PTHR31561:SF67MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433MetaCyc:PWY-6598
MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724MetaCyc:PWY-7725
EnsemblPlantsGene:SORBI_3001G438100SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-likeUniParc:UPI0003C6D38ASEG:seg
Description
hypothetical protein
Coordinates
chr1:+:71631156..71634003
Molecular Weight (calculated)
60621.5 Da
IEP (calculated)
9.180
GRAVY (calculated)
-0.069
Length
549 amino acids
Sequence
(BLAST)
001: MEAAPAAVME RERLTAEMAF RGADEALRDG GGEPAPSIVI KIRRRLPDFA RNIKLKYVKL GIRHGGSPTS VLPMLCVPAI AAAAYSFVRL DVIYYSIDLL
101: TCVAWLGTAL LLLTVYYFKR PRPVYLVEFA CYKPEEQLKI SKSAFLEMTE STGSFNEAAL DFQTKITNRS ALGDETYLPP GVQARPPRLN MAEARMEAEA
201: VMFGCLDALF ASTGIDPRRD VRILIVNCSL FNPTPSLASM IINHYRMRED VKSFNLGGMG CSAGLIAIDL AKDMLQANPN SYAVVLSTEN ITLNWYFGND
301: RSMLLSNCIF RMGGAAALLS NKRADAGRAK YRLLHTVRTH KGATDECFNC VYQREDEVGK VGVSLARELM AVAGDALKTN ITTLGPLVLP LSEQLKFLKS
401: LMMRRVFRVK GVRPYIPDFR RAFEHFCVHA GGRAVLEEVQ RSLSLQDTDM EPSKCSLHRF GNTSSSSLWY ELAYAEAKGR VRRGNRVWQI GFGSGFKCNS
501: AVWRALQDVP ALSSSSSTGA AAAGKGAQSK SCCNPWVDDV DRYPPKAYV
Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.