CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027766_P001	Maize	mitochondrion	88.28	88.28
TraesCS4A01G025300.1	Wheat	golgi	71.83	74.66
TraesCS4B01G278800.1	Wheat	golgi	71.83	74.51
TraesCS4D01G277300.1	Wheat	golgi	71.46	74.26
HORVU4Hr1G073840.2	Barley	golgi	71.46	74.26
EER91618	Sorghum	plastid	65.03	65.65
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	44.8	59.4
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	54.44	55.81
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	54.06	55.75
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	55.01	55.53
KXG28804	Sorghum	plastid	52.55	53.26
EER92628	Sorghum	plasma membrane	48.96	52.43
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	50.66	50.38
EER91722	Sorghum	peroxisome	50.85	50.28
KXG30818	Sorghum	golgi, mitochondrion	45.75	49.69
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	48.77	49.62
KXG19727	Sorghum	mitochondrion, plastid	45.18	48.48
EER89559	Sorghum	mitochondrion, plasma membrane	43.86	47.35
KXG39781	Sorghum	peroxisome	48.39	46.63
EER89567	Sorghum	endoplasmic reticulum, golgi, plastid	40.08	46.49
EES00849	Sorghum	endoplasmic reticulum, golgi	42.72	45.75
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	41.02	45.11
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	41.02	44.29
OQU76197	Sorghum	golgi	40.08	44.26
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	38.37	42.12
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	41.97	40.88
EES19986	Sorghum	cytosol	6.99	16.74

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:8059847
InterPro:ACP_syn_III_C	UniProt:C5WWX3	EnsemblPlants:EER95458	ProteinID:EER95458	ProteinID:EER95458.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF13	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433
MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724
MetaCyc:PWY-7725	EnsemblPlantsGene:SORBI_3001G495500	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0001A82F80
RefSeq:XP_002468460.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:76491339..76496100

Molecular Weight (calculated)

57403.9 Da

IEP (calculated)

9.465

GRAVY (calculated)

-0.033

Length

529 amino acids

Sequence
(BLAST)

001: MANQQHRSSI AGMDRELFRT VRQAALNHAR LLYHRLVSRL PHLLAVTLVV AAAQLVPPPS SAHAARTLLR EAAARADAGL VAAALAACAC ACAYAALRPR
101: PVYLVDLAAY RPGPAHRATR AESVRHFALA GRFTDESVAF QTRMLERAGV GDATHFPASI LANPVDMSLR AAREESEAVV FGVVDDLLRT TAVRAADVGV
201: VIVNSSLFSP TPSFTSLLVN RYGLRHDVVT HNLSGMGCSA GIIAIDLAKH LLQVHPNTYA LVVSTENITL NAYLGNHRPM LVTNTLFRMG GAAVLLSNRR
301: SDRGRAKYRL VHTVRTHRGG AASDDSYACV TQEEDGEGNV GVSLSKNLMS VAGDALRCNI TTLGPLVLPL SEQLRFLRAA LLRRAAVKVK PYVPDFKLAL
401: EHFCIHAGGR GVLDELERSL GLSAWHMEPS RMTLYRFGNT SSSSLWYELA YCEAKGRIKK GDRVWQIAFG SGFKCNSAVW KALRTVDDAA RETNNPWADE
501: IDDLPVHVPK VSPFDSSDQQ PASTNGQHA

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.