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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • endoplasmic reticulum 2
  • cytosol 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0591200-01 Rice mitochondrion 58.83 72.45
CDX94721 Canola cytosol 50.94 68.43
TraesCS6A01G073300.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 64.47 67.52
TraesCS6B01G098300.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 64.47 66.86
TraesCS4D01G148300.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 64.1 66.6
CDY63070 Canola cytosol 45.86 66.3
KXG28804 Sorghum plastid 65.04 66.28
TraesCS4A01G164400.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 63.16 65.62
TraesCS6D01G071600.1 Wheat cytosol, endoplasmic reticulum, peroxisome, plastid 64.47 62.94
KRH34362 Soybean plasma membrane 60.9 62.67
PGSC0003DMT400042065 Potato cytosol 43.61 62.37
KRG92437 Soybean plasma membrane 60.53 62.28
Solyc09g083050.2.1 Tomato plasma membrane 59.21 61.4
KRH31633 Soybean endoplasmic reticulum, nucleus, plastid 59.59 61.32
Solyc03g005320.2.1 Tomato plasma membrane 59.77 61.27
VIT_05s0020g04540.t01 Wine grape plasma membrane 59.96 61.23
PGSC0003DMT400034973 Potato plasma membrane 59.59 61.08
PGSC0003DMT400015633 Potato plasma membrane 59.59 60.84
KRH69063 Soybean endoplasmic reticulum, peroxisome, plasma membrane 59.21 60.46
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 57.33 59.11
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 58.08 58.97
CDX89834 Canola plasma membrane 57.71 58.93
Bra033694.1-P Field mustard golgi, peroxisome, plastid 58.08 58.75
CDY14892 Canola endoplasmic reticulum, golgi, plastid 57.71 58.37
Bra015296.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 57.89 58.22
Bra035992.1-P Field mustard plasma membrane 57.52 58.17
AT1G04220.1 Thale cress plasma membrane 57.71 58.14
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 56.02 58.09
CDX96912 Canola endoplasmic reticulum, golgi, plastid 57.52 58.06
CDY18212 Canola plasma membrane 57.71 58.03
AT5G43760.1 Thale cress endoplasmic reticulum, plasma membrane, plastid 57.52 57.84
Solyc06g053870.2.1 Tomato mitochondrion 51.13 55.97
PGSC0003DMT400042071 Potato plasma membrane 50.94 55.53
PGSC0003DMT400041959 Potato endoplasmic reticulum, golgi, vacuole 45.68 55.35
PGSC0003DMT400014188 Potato endoplasmic reticulum, golgi, plasma membrane 50.94 54.97
EER92628 Sorghum plasma membrane 50.94 54.86
GSMUA_Achr3P15310_001 Banana cytosol, nucleus, plastid 50.19 54.71
Solyc05g013220.2.1 Tomato endoplasmic reticulum, golgi, plastid 50.38 54.36
EES19964 Sorghum endoplasmic reticulum, plasma membrane, plastid 52.82 54.04
PGSC0003DMT400041960 Potato endoplasmic reticulum, golgi, vacuole 44.74 53.12
KRH04744 Soybean endoplasmic reticulum, plasma membrane, vacuole 45.49 51.82
Solyc06g053900.2.1 Tomato cytosol, plasma membrane, plastid 47.93 51.52
EER95458 Sorghum mitochondrion 50.38 50.66
KRH57768 Soybean plasma membrane 44.55 50.53
EER91618 Sorghum plastid 48.87 49.62
EER91722 Sorghum peroxisome 49.81 49.53
KXG30818 Sorghum golgi, mitochondrion 45.3 49.49
EER89559 Sorghum mitochondrion, plasma membrane 45.11 48.98
KXG19727 Sorghum mitochondrion, plastid 43.8 47.26
KXG39781 Sorghum peroxisome 47.18 45.72
KXG19733 Sorghum endoplasmic reticulum, plasma membrane, vacuole 41.17 45.53
EER89567 Sorghum endoplasmic reticulum, golgi, plastid 38.53 44.96
EER95395 Sorghum cytosol, peroxisome, plasma membrane 45.3 44.38
EER88189 Sorghum endoplasmic reticulum, plasma membrane, vacuole 39.1 43.15
OQU76197 Sorghum golgi 38.16 42.38
EES03073 Sorghum endoplasmic reticulum, golgi, plasma membrane 38.53 41.84
EES00849 Sorghum endoplasmic reticulum, golgi 38.72 41.7
EES19986 Sorghum cytosol 7.14 17.19
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synMapMan:5.1.6.1.1EntrezGene:8079130ProteinID:AAD27560.1
ProteinID:AAM94300.1InterPro:ACP_syn_III_CEnsemblPlants:EES08876ProteinID:EES08876ProteinID:EES08876.1InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740
GO:GO:0016746GO:GO:0016747InterPro:IPR016039PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417
PANTHER:PTHR31561PANTHER:PTHR31561:SF62MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433
MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724
MetaCyc:PWY-7725UniProt:Q9XEP1EnsemblPlantsGene:SORBI_3005G193600SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-like
UniParc:UPI00000A98FCRefSeq:XP_002449888.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr5:+:67709463..67711470
Molecular Weight (calculated)
58143.5 Da
IEP (calculated)
9.343
GRAVY (calculated)
0.043
Length
532 amino acids
Sequence
(BLAST)
001: MSIKSETNER SSTIQSAGHR ICSIVKLCYQ HLMLAVSYAL YLFLAPIILA TLVLHLSRHT SADDDLIVSA RSTLTANLPF TVVVVAAAAT AVYLMRRPRA
101: VYLLDLACYK PGAEHAVTRE TFMRLVVGYG TFSDDSLAFQ RKILERSGLG QGTYLPKALT SSPPNPCMAE ARREAEAVMF GAVDQLLAKT GVRAGDIGIV
201: VVNSGLFSPT PSLSAMIVHH YKLRRDVSSY NLAGMGCSAS LISVDLAKQL LQVQRNTYAL VVSLEIMAAS AYVGNTRSML VPNCIFRMGG AAVLLTNHGT
301: ERRRAKYQLL HTVRTHQGAD DRAYRCVYQE EDESGHVGVA LSKDLMSVAA EALKTNITTL GPRVLPMSEK MKMMLVGGKA AVVQVLGVQQ QGQGGSRSRP
401: YIPDLTTAFE HFCIHAGGRA VLDTVERSLD LSAWHMEPSR MTLYRWGNTS SSSLWYELAY TEAKGRVRRG HRVCQIAFGS GFKCNSAVWR ALRTIDPAKE
501: SAAAGNPWVE EIHRFPVEVP QVERVDVAAM AS
Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.