Factsheet for Solyc06g053900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	83.03	93.62
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	78.99	87.28
CDX94721	Canola	cytosol	51.92	64.9
Solyc06g053870.2.1	Tomato	mitochondrion	62.42	63.58
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	61.41	61.66
CDY63070	Canola	cytosol	45.45	61.14
Solyc09g083050.2.1	Tomato	plasma membrane	60.81	58.67
Solyc03g005320.2.1	Tomato	plasma membrane	61.21	58.38
Solyc12g006820.1.1	Tomato	plasma membrane	57.98	57.4
Os11t0591200-01	Rice	mitochondrion	49.9	57.18
Solyc08g067410.1.1	Tomato	plasma membrane	58.18	57.03
CDX89834	Canola	plasma membrane	59.39	56.43
Solyc06g065560.1.1	Tomato	nucleus	57.98	55.95
CDY18212	Canola	plasma membrane	59.39	55.58
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	59.19	55.39
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	58.79	55.32
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	58.99	55.2
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	58.59	55.13
AT1G04220.1	Thale cress	plasma membrane	58.79	55.11
Bra035992.1-P	Field mustard	plasma membrane	58.38	54.94
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	58.38	54.84
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	55.96	54.53
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	55.96	54.0
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	55.56	53.71
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	54.55	52.73
Zm00001d048953_P001	Maize	mitochondrion, plastid	53.94	52.05
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	56.16	51.01
KXG28804	Sorghum	plastid	53.74	50.96
Solyc02g063140.2.1	Tomato	golgi	50.91	50.81
Solyc02g085870.2.1	Tomato	plasma membrane	50.71	50.6
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	47.68	50.54
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	52.73	50.48
KRH57768	Soybean	plasma membrane	47.47	50.11
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	49.29	49.39
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	48.28	48.98
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	50.3	47.98
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	51.52	47.93
Solyc10g009240.2.1	Tomato	peroxisome	50.91	47.64
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	43.43	42.49
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	38.18	41.91
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	37.37	41.86

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4C677	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc06g053900.2
EnsemblPlants:Solyc06g053900.2.1	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000276596B	SEG:seg	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:K4C677]

Coordinates

chr6:-:36774450..36776137

Molecular Weight (calculated)

56016.5 Da

IEP (calculated)

8.721

GRAVY (calculated)

0.001

Length

495 amino acids

Sequence
(BLAST)

001: MAQNIGSNFF TVKDLKLGYH FLISHTPYLF IIPAISVLGC YNLSTITTLE DLNNHIILML KSWPIIIIIF TALYLIRGHP RNVYLVDFAC YKPDEADMMS
101: KQQLLDIMSL TFDDEAVDLQ KKVLEKSGYS DKTYVPEGIR RLPEKLMTFE ESRKETEKVM FGAIDDLLAK TKVKAHEIGI VIVNIGLYNP TPSLSSMIVN
201: HYKLRSNVLT YNISGMGCSA GLISIDLANR ILQTQVISAY AMVVSTESIH CGYYLGKDKS KLVTNCLFRM GAAAILLSNC FSDSRRSKYK LMHVVRTHKG
301: ADERAFRSIY QEQDEDGNIG VSLSKSVMAV AGETLKSNIT ALGPLVLPMS EQLLYFGYLI ARKIFKLKNM KPYIPDFKLA FEHFFIHAGG RAVLDEMEKN
401: LQLTEWHMEP SRMTLFRFGN TSSSSLWYEL AYSEAKGRIK KGDRAWQIGF GSGFKCHSVV WQALKTINPA MEKNPWTDEI HDFPVNIPLV MPLSV

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.