Factsheet for GSMUA_Achr3P15310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94721	Canola	cytosol	54.71	67.42
CDY63070	Canola	cytosol	50.0	66.3
GSMUA_Achr10P...	Banana	plasma membrane	57.38	64.81
Solyc09g083050.2.1	Tomato	plasma membrane	67.42	64.13
Os11t0591200-01	Rice	mitochondrion	56.56	63.89
VIT_05s0020g04540.t01	Wine grape	plasma membrane	68.03	63.72
KRH34362	Soybean	plasma membrane	67.21	63.44
KRG92437	Soybean	plasma membrane	67.01	63.25
KRH69063	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	67.21	62.96
PGSC0003DMT400015633	Potato	plasma membrane	67.21	62.96
KRH31633	Soybean	endoplasmic reticulum, nucleus, plastid	66.6	62.86
PGSC0003DMT400034973	Potato	plasma membrane	66.8	62.81
GSMUA_AchrUn_...	Banana	peroxisome	51.02	62.72
Solyc03g005320.2.1	Tomato	plasma membrane	66.6	62.62
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	49.59	61.89
CDX89834	Canola	plasma membrane	63.52	59.5
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	61.27	58.86
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	63.73	58.79
CDY18212	Canola	plasma membrane	63.52	58.6
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	61.48	58.48
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	62.91	58.37
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	61.07	58.2
AT1G04220.1	Thale cress	plasma membrane	62.91	58.14
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	62.91	58.03
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	62.5	57.98
PGSC0003DMT400042065	Potato	cytosol	44.06	57.8
Bra035992.1-P	Field mustard	plasma membrane	62.3	57.79
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	62.3	57.69
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	60.45	57.62
Zm00001d048953_P001	Maize	mitochondrion, plastid	60.04	57.12
KXG28804	Sorghum	plastid	60.25	56.32
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	48.57	56.16
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	45.9	56.14
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	53.69	55.63
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	61.27	54.86
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	51.23	53.53
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	41.8	52.85
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	53.28	52.74
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	53.28	52.74
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	47.34	52.62
Solyc06g053870.2.1	Tomato	mitochondrion	52.05	52.26
PGSC0003DMT400042071	Potato	plasma membrane	52.25	52.25
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	47.34	52.14
KRH57768	Soybean	plasma membrane	50.0	52.03
GSMUA_Achr1P02540_001	Banana	cytosol	44.88	51.65
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	46.72	51.12
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	40.37	51.04
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	47.75	50.43
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	54.71	50.19
GSMUA_Achr3P07400_001	Banana	plasma membrane	39.96	50.13
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	45.7	49.78
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	42.42	49.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	44.88	49.1
GSMUA_Achr5P05870_001	Banana	plasma membrane	42.01	48.81
GSMUA_Achr3P02180_001	Banana	plasma membrane	35.04	48.44
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	48.98	48.28
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	47.13	47.23

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr3G15310_001	EnsemblPlants:GSMUA_Achr3P15310_001	EnsemblPlants:GSMUA_Achr3T15310_001
InterPro:IPR016039	UniProt:M0SEU7	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI00029521AE	SEG:seg

Description

3-ketoacyl-CoA synthase 17 [Source:GMGC_GENE;Acc:GSMUA_Achr3G15310_001]

Coordinates

chr3:+:15853260..15856669

Molecular Weight (calculated)

54920.6 Da

IEP (calculated)

9.403

GRAVY (calculated)

-0.205

Length

488 amino acids

Sequence
(BLAST)

001: MLDVKNLFND SVKHIDHTII TRKDLVDQKG RMPNGNAQHV CQRTLYQPRN TLPAYETGMG WSSKRNDSDT VRVRAIENLT FGDLLLLRDS LRSNPATLVL
101: CYALMVFLAT LLFMKRPRPV YLVDFACYKP SCALKCTREF FVEHSARTGI FTDDNLAFQK KILERSGLGQ STYFPEAMFE TPPKLCMAGA RKEAEMVMFG
201: AIDELLQKTG VKAKDIDILI VNCSLFNPTP SLSAMVVNHY KLRGNIQSYN LGGMGCSAGL ISIDLAKQLL QVHRNSNALV VSTENITLNW YFGNNRSMLV
301: PNCLFRAGCA AVLLTNRSAA HRRSKYQLIH TVRTHKGADE SSYNCVFQHE DDEGKVGVAL SKDLMKVAGD ALKANITALG PLVLPLSEQL LFSLELTDRH
401: MEPSRMTLYR FGNTSSSSLW YELAYSEAKG RIKKGDRTWQ IAFGSGFKCN SAVWRALRTI NPAKEKNPWM EEIHEFPVRV PRVEAIRT

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.